SMTL ID : 3n5h.1

Human fpps complex with NOV_304

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

4 x GO0: 3-(carboxymethyl)-4,7-dichloro-1H-indole-2-carboxylic acid(Non-covalent)

GO0.1: 12 residues within 4Å: Chain A: Y.7, K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, K.347 Ligands: PO4.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.56, A:F.203, A:F.236 Hydrogen bonds: A:N.56, A:K.344 Water bridges: A:N.56, A:R.57, A:R.57, A:K.344, A:K.344 Salt bridges: A:K.54, A:K.54, A:R.57, A:K.344, A:K.347 GO0.2: 8 residues within 4Å: Chain A: S.106, L.107, T.108, I.255, T.257, Q.260, D.261, K.290 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.107 Hydrogen bonds: A:L.107, A:T.108, A:T.108 Salt bridges: A:K.290 GO0.4: 12 residues within 4Å: Chain B: Y.7, K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, K.347 Ligands: PO4.6 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:N.56, B:F.203, B:F.236 Hydrogen bonds: B:N.56, B:K.344 Water bridges: B:N.56, B:R.57, B:R.57, B:K.344, B:K.344 Salt bridges: B:K.54, B:K.54, B:R.57, B:K.344, B:K.347 GO0.5: 8 residues within 4Å: Chain B: S.106, L.107, T.108, I.255, T.257, Q.260, D.261, K.290 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.107 Hydrogen bonds: B:L.107, B:T.108, B:T.108 Water bridges: B:T.108 Salt bridges: B:K.290

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: G.53, K.54, R.57, Q.93, R.110 Ligands: GO0.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.54, A:Q.93 Water bridges: A:G.53, A:Y.55, A:N.56, A:R.57, A:R.57, A:R.57, A:R.110 Salt bridges: A:R.57, A:R.110 PO4.6: 6 residues within 4Å: Chain B: G.53, K.54, R.57, Q.93, R.110 Ligands: GO0.4 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:K.54, B:Q.93 Water bridges: B:G.53, B:Y.55, B:N.56, B:R.57, B:R.57, B:R.57, B:R.110 Salt bridges: B:R.57, B:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery. Nat.Chem.Biol. (2010)

Release Date

2010-08-18

Peptides

FARNESYL PYROPHOSPHATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

FARNESYL PYROPHOSPHATE SYNTHASE

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