SMTL ID : 3n6k.1

Human FPPS complex with NOV_823

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x BFH: 1-(carboxymethyl)-1H-benzo[g]indole-2-carboxylic acid(Non-covalent)

BFH.1: 11 residues within 4Å: Chain A: K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 Ligands: PO4.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.56, A:R.57, A:F.203, A:F.203, A:K.344, A:I.345 Hydrogen bonds: A:N.56 Water bridges: A:R.57, A:R.57, A:R.57 Salt bridges: A:K.54, A:K.54, A:R.57 BFH.3: 11 residues within 4Å: Chain B: K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 Ligands: PO4.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:N.56, B:R.57, B:F.203, B:F.203, B:K.344, B:I.345 Hydrogen bonds: B:N.56 Water bridges: B:R.57, B:R.57, B:R.57 Salt bridges: B:K.54, B:K.54, B:R.57

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: G.53, K.54, Q.93, R.110 Ligands: BFH.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.54 Water bridges: A:R.57, A:R.57, A:R.57, A:E.90, A:Q.93, A:Q.93, A:Q.93 Salt bridges: A:K.54, A:R.110 PO4.4: 5 residues within 4Å: Chain B: G.53, K.54, Q.93, R.110 Ligands: BFH.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.54 Water bridges: B:R.57, B:R.57, B:R.57, B:E.90, B:Q.93, B:Q.93, B:Q.93 Salt bridges: B:K.54, B:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jahnke, W. et al., Allosteric non-bisphosphonate FPPS inhibitors identified by fragment-based discovery. Nat.Chem.Biol. (2010)

Release Date

2010-08-18

Peptides

FARNESYL PYROPHOSPHATE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

FARNESYL PYROPHOSPHATE SYNTHASE

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