SMTL ID : 3nba.1 (1 other biounit)

Phosphopantetheine Adenylyltranferase from Mycobacterium tuberculosis in complex with adenosine-5'-[(alpha,beta)-methyleno]triphosphate (AMPCPP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.68 Å

Oligo State

homo-hexamer

Ligands

6 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 17 residues within 4Å: Chain A: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.29, A:F.30, A:G.108, A:R.110, A:Y.142, A:S.146, A:S.147, A:S.148, A:S.148, A:S.148 Water bridges: A:S.29, A:R.110, A:S.147 APC.3: 17 residues within 4Å: Chain B: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.29, B:S.29, B:F.30, B:K.107, B:K.107, B:G.108, B:R.110, B:R.110, B:T.138, B:V.145, B:S.146, B:S.147, B:S.148 Water bridges: B:A.139, B:S.147 Salt bridges: B:R.110 APC.5: 17 residues within 4Å: Chain C: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:S.29, C:F.30, C:G.108, C:R.110, C:Y.142, C:S.146, C:S.147, C:S.148, C:S.148, C:S.148 Water bridges: C:S.29, C:R.110, C:S.147 APC.7: 17 residues within 4Å: Chain D: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.8 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.29, D:S.29, D:F.30, D:K.107, D:K.107, D:G.108, D:R.110, D:R.110, D:T.138, D:V.145, D:S.146, D:S.147, D:S.148 Water bridges: D:A.139, D:S.147 Salt bridges: D:R.110 APC.9: 17 residues within 4Å: Chain E: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.10 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:S.29, E:F.30, E:G.108, E:R.110, E:Y.142, E:S.146, E:S.147, E:S.148, E:S.148, E:S.148 Water bridges: E:S.29, E:R.110, E:S.147 APC.11: 17 residues within 4Å: Chain F: P.27, G.28, S.29, F.30, G.36, H.37, I.40, K.107, G.108, R.110, T.138, Y.142, V.145, S.146, S.147, S.148 Ligands: MG.12 16 PLIP interactions: 16 interactions with chain F Hydrogen bonds: F:S.29, F:S.29, F:F.30, F:K.107, F:K.107, F:G.108, F:R.110, F:R.110, F:T.138, F:V.145, F:S.146, F:S.147, F:S.148 Water bridges: F:A.139, F:S.147 Salt bridges: F:R.110

6 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: APC.1 No protein-ligand interaction detected (PLIP) MG.4: 1 residues within 4Å: Ligands: APC.3 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: APC.5 No protein-ligand interaction detected (PLIP) MG.8: 1 residues within 4Å: Ligands: APC.7 No protein-ligand interaction detected (PLIP) MG.10: 1 residues within 4Å: Ligands: APC.9 No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Ligands: APC.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wubben, T.J. et al., Kinetic, thermodynamic, and structural insight into the mechanism of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis. J.Mol.Biol. (2010)

Release Date

2010-09-15

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
A

D
C

E
A

F
C

Phosphopantetheine adenylyltransferase

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