SMTL ID : 3nbk.1 (1 other biounit)

Phosphopantetheine Adenylyltransferase from Mycobacterium tuberculosis in complex with 4'-phosphopantetheine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

homo-hexamer

Ligands

6 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.1: 12 residues within 4Å: Chain A: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.124, N.125 Chain E: L.149, E.152, L.156 16 PLIP interactions: 3 interactions with chain E, 13 interactions with chain A Hydrophobic interactions: E:L.156, A:L.56 Hydrogen bonds: E:E.152, E:E.152, A:S.29, A:V.93 Water bridges: A:S.29, A:S.29, A:S.29, A:S.29, A:H.37, A:H.37, A:N.58, A:N.58, A:V.94, A:K.107 PNS.3: 13 residues within 4Å: Chain B: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.121, M.124, N.125 Chain D: L.149, E.152, L.156 14 PLIP interactions: 2 interactions with chain D, 12 interactions with chain B Hydrophobic interactions: D:L.156, B:L.56 Hydrogen bonds: D:E.152, B:S.29, B:V.93 Water bridges: B:S.29, B:S.29, B:S.29, B:S.29, B:S.29, B:F.30, B:H.37, B:V.94, B:K.107 PNS.4: 12 residues within 4Å: Chain A: L.149, E.152, L.156 Chain C: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.124, N.125 16 PLIP interactions: 13 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.56, A:L.156 Hydrogen bonds: C:S.29, C:V.93, A:E.152, A:E.152 Water bridges: C:S.29, C:S.29, C:S.29, C:S.29, C:H.37, C:H.37, C:N.58, C:N.58, C:V.94, C:K.107 PNS.6: 13 residues within 4Å: Chain D: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.121, M.124, N.125 Chain F: L.149, E.152, L.156 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:L.56, F:L.156 Hydrogen bonds: D:S.29, D:V.93, F:E.152 Water bridges: D:S.29, D:S.29, D:S.29, D:S.29, D:S.29, D:F.30, D:H.37, D:V.94, D:K.107 PNS.7: 12 residues within 4Å: Chain C: L.149, E.152, L.156 Chain E: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.124, N.125 16 PLIP interactions: 13 interactions with chain E, 3 interactions with chain C Hydrophobic interactions: E:L.56, C:L.156 Hydrogen bonds: E:S.29, E:V.93, C:E.152, C:E.152 Water bridges: E:S.29, E:S.29, E:S.29, E:S.29, E:H.37, E:H.37, E:N.58, E:N.58, E:V.94, E:K.107 PNS.9: 13 residues within 4Å: Chain B: L.149, E.152, L.156 Chain F: G.28, S.29, L.56, G.91, L.92, V.93, K.107, M.121, M.124, N.125 14 PLIP interactions: 12 interactions with chain F, 2 interactions with chain B Hydrophobic interactions: F:L.56, B:L.156 Hydrogen bonds: F:S.29, F:V.93, B:E.152 Water bridges: F:S.29, F:S.29, F:S.29, F:S.29, F:S.29, F:F.30, F:H.37, F:V.94, F:K.107

3 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.20, D.49 Chain B: H.20, D.49 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.20, B:D.49, A:D.49 NI.5: 4 residues within 4Å: Chain C: H.20, D.49 Chain D: H.20, D.49 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Metal complexes: D:H.20, D:D.49, C:D.49 NI.8: 4 residues within 4Å: Chain E: H.20, D.49 Chain F: H.20, D.49 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Metal complexes: F:H.20, F:D.49, E:D.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wubben, T.J. et al., Kinetic, thermodynamic, and structural insight into the mechanism of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis. J.Mol.Biol. (2010)

Release Date

2010-09-15

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Phosphopantetheine adenylyltransferase

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