SMTL ID : 3pnb.1 (1 other biounit)

Phosphopantetheine Adenylyltransferase from Mycobacterium tuberculosis in complex with coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-hexamer

Ligands

6 x COA: COENZYME A(Non-covalent)

COA.1: 17 residues within 4Å: Chain A: G.28, S.29, L.56, N.58, G.91, L.92, V.93, K.107, D.114, Y.117, M.121, M.124, N.125, S.148 Chain E: L.149, E.152, L.156 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain E Hydrophobic interactions: A:L.56, E:L.156 Hydrogen bonds: A:S.29, A:S.29, A:N.58, A:V.93, A:D.114, A:S.148, E:E.152 Water bridges: A:F.30, A:V.94, A:K.107, A:R.110, A:R.110, A:R.110, A:R.110 pi-Stacking: A:Y.117 COA.2: 18 residues within 4Å: Chain B: G.28, S.29, L.56, G.91, L.92, V.93, K.107, R.110, D.114, Y.117, M.121, M.124, N.125, S.148 Chain D: L.149, E.152, V.153, L.156 18 PLIP interactions: 15 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.56, D:L.156 Hydrogen bonds: B:S.29, B:V.93, B:R.110, B:D.114, B:D.114, B:S.148, D:E.152, D:E.152 Water bridges: B:F.30, B:V.94, B:K.107, B:K.107, B:R.110, B:S.146 Salt bridges: B:K.107 pi-Stacking: B:Y.117 COA.3: 17 residues within 4Å: Chain A: L.149, E.152, L.156 Chain C: G.28, S.29, L.56, N.58, G.91, L.92, V.93, K.107, D.114, Y.117, M.121, M.124, N.125, S.148 17 PLIP interactions: 15 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:L.56, A:L.156 Hydrogen bonds: C:S.29, C:S.29, C:N.58, C:V.93, C:D.114, C:S.148, A:E.152 Water bridges: C:F.30, C:V.94, C:K.107, C:R.110, C:R.110, C:R.110, C:R.110 pi-Stacking: C:Y.117 COA.4: 18 residues within 4Å: Chain D: G.28, S.29, L.56, G.91, L.92, V.93, K.107, R.110, D.114, Y.117, M.121, M.124, N.125, S.148 Chain F: L.149, E.152, V.153, L.156 18 PLIP interactions: 15 interactions with chain D, 3 interactions with chain F Hydrophobic interactions: D:L.56, F:L.156 Hydrogen bonds: D:S.29, D:V.93, D:R.110, D:D.114, D:D.114, D:S.148, F:E.152, F:E.152 Water bridges: D:F.30, D:V.94, D:K.107, D:K.107, D:R.110, D:S.146 Salt bridges: D:K.107 pi-Stacking: D:Y.117 COA.5: 17 residues within 4Å: Chain C: L.149, E.152, L.156 Chain E: G.28, S.29, L.56, N.58, G.91, L.92, V.93, K.107, D.114, Y.117, M.121, M.124, N.125, S.148 17 PLIP interactions: 15 interactions with chain E, 2 interactions with chain C Hydrophobic interactions: E:L.56, C:L.156 Hydrogen bonds: E:S.29, E:S.29, E:N.58, E:V.93, E:D.114, E:S.148, C:E.152 Water bridges: E:F.30, E:V.94, E:K.107, E:R.110, E:R.110, E:R.110, E:R.110 pi-Stacking: E:Y.117 COA.6: 18 residues within 4Å: Chain B: L.149, E.152, V.153, L.156 Chain F: G.28, S.29, L.56, G.91, L.92, V.93, K.107, R.110, D.114, Y.117, M.121, M.124, N.125, S.148 18 PLIP interactions: 15 interactions with chain F, 3 interactions with chain B Hydrophobic interactions: F:L.56, B:L.156 Hydrogen bonds: F:S.29, F:V.93, F:R.110, F:D.114, F:D.114, F:S.148, B:E.152, B:E.152 Water bridges: F:F.30, F:V.94, F:K.107, F:K.107, F:R.110, F:S.146 Salt bridges: F:K.107 pi-Stacking: F:Y.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wubben, T. et al., Structure of Mycobacterium tuberculosisphosphopantetheine adenylyltransferase in complex with the feedback inhibitor CoA reveals only one active-site conformation. Acta Crystallogr.,Sect.F (2011)

Release Date

2011-06-22

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
A

D
D

E
A

F
D

Phosphopantetheine adenylyltransferase

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