SMTL ID : 3nmu.1 (2 other biounits)

Crystal Structure of substrate-bound halfmer box C/D RNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 14 residues within 4Å: Chain A: E.358, Y.359 Chain C: K.64, G.88, A.90, E.112, F.113, S.114, G.136, D.137, A.138, D.157, V.158, Q.160 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:F.113, C:D.137, C:A.138, C:Q.160, A:E.358, A:Y.359 Salt bridges: C:D.157, A:E.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, S. et al., Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol.Cell (2010)

Release Date

2011-05-25

Peptides

NOP5/NOP56 related protein: A
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase: C
50S ribosomal protein L7Ae: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
F

D
G

NOP5/NOP56 related protein

Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase

50S ribosomal protein L7Ae

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