SMTL ID : 3nvk.1

Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 17 residues within 4Å: Chain A: E.358, Y.359 Chain E: R.62, K.64, G.88, A.90, T.94, I.111, E.112, F.113, G.136, D.137, A.138, D.157, V.158, Q.160, E.223 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:K.64, E:F.113, E:D.137, E:A.138, E:T.139, E:V.158, E:Q.160, A:Y.359 Salt bridges: E:D.157, A:E.358 SAM.2: 14 residues within 4Å: Chain B: E.358, Y.359 Chain F: R.62, K.64, G.88, A.90, I.111, E.112, F.113, D.137, A.138, D.157, V.158, Q.160 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain F Hydrogen bonds: B:Y.359, F:G.88, F:A.138, F:T.139, F:V.158, F:Q.160 Salt bridges: B:E.358, F:D.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, S. et al., Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle. Mol.Cell (2010)

Release Date

2011-07-20

Peptides

NOP5/NOP56 related protein: AB
50S ribosomal protein L7Ae: CD
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
E

D
H

E
I

F
J

NOP5/NOP56 related protein

50S ribosomal protein L7Ae

Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase

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