- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 12 x MRY: MESO-ERYTHRITOL(Non-covalent)
MRY.4: 4 residues within 4Å:- Chain A: Y.138, R.162
- Chain C: N.682, H.685
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.682
MRY.5: 7 residues within 4Å:- Chain A: N.126, A.128, P.129, Y.130, Y.257, V.336, C.337
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.128, A:Y.257, A:C.337
- Water bridges: A:K.131
MRY.6: 4 residues within 4Å:- Chain A: S.360, N.484, H.485, R.488
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.360, A:N.484
MRY.9: 4 residues within 4Å:- Chain A: F.167, E.168, I.171, D.172
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.172
MRY.13: 4 residues within 4Å:- Chain A: N.682, H.685
- Chain B: Y.138, R.162
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.682
MRY.14: 7 residues within 4Å:- Chain B: N.126, A.128, P.129, Y.130, Y.257, V.336, C.337
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.128, B:Y.257, B:C.337
- Water bridges: B:K.131
MRY.15: 4 residues within 4Å:- Chain B: S.360, N.484, H.485, R.488
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.360, B:N.484
MRY.18: 4 residues within 4Å:- Chain B: F.167, E.168, I.171, D.172
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.172
MRY.22: 4 residues within 4Å:- Chain B: N.682, H.685
- Chain C: Y.138, R.162
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.682
MRY.23: 7 residues within 4Å:- Chain C: N.126, A.128, P.129, Y.130, Y.257, V.336, C.337
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.128, C:Y.257, C:C.337
- Water bridges: C:K.131
MRY.24: 4 residues within 4Å:- Chain C: S.360, N.484, H.485, R.488
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.360, C:N.484
MRY.27: 4 residues within 4Å:- Chain C: F.167, E.168, I.171, D.172
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.172
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)
- Release Date
- 2010-12-01
- Peptides
- Envelope glycoprotein B: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.76 Å
- Oligo State
- homo-trimer
- Ligands
- 12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 12 x MRY: MESO-ERYTHRITOL(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stampfer, S.D. et al., Structural basis of local, pH-dependent conformational changes in glycoprotein B from herpes simplex virus type 1. J.Virol. (2010)
- Release Date
- 2010-12-01
- Peptides
- Envelope glycoprotein B: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A