SMTL ID : 3o40.1

Complex of a chimeric alpha/beta-peptide based on the gp41 CHR domain bound to gp41-5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.15, H.19 Chain B: Y.14, R.17 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.15, A:E.15, A:H.19, B:R.17 GOL.3: 4 residues within 4Å: Chain A: H.100, Q.103, L.104, W.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.100 GOL.4: 8 residues within 4Å: Chain A: K.29, Q.32, G.38, G.39, W.43, M.44, W.46, D.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.32, A:D.47, A:D.47

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 9 residues within 4Å: Chain A: G.123, E.126, W.127, E.130, Y.134, H.181, Q.184, L.185, W.188 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.181

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: R.12 Chain B: R.17, L.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnson, L.M. et al., Broad Distribution of Energetically Important Contacts across an Extended Protein Interface. J.Am.Chem.Soc. (2011)

Release Date

2011-07-27

Peptides

gp41-5: A
chimeric alpha/beta peptide based on gp41 CHR domain sequence: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

gp41-5

chimeric alpha/beta peptide based on gp41 CHR domain sequence

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