SMTL ID : 4rfw.1

Crystal structure of human retinoid X Receptor alpha-ligand binding domain complex with 9cUAB70 and the coactivator peptide GRIP-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 3RB: (2E,4E,6Z,8E)-3,7-dimethyl-8-(6,7,8,9-tetrahydro-5H-benzo[7]annulen-5-ylidene)octa-2,4,6-trienoic acid(Non-covalent)

3RB.1: 13 residues within 4Å: Chain A: I.41, A.44, A.45, Q.48, F.86, R.89, L.99, A.100, I.118, F.119, C.205, L.209, F.212 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.41, A:Q.48, A:F.86, A:F.86, A:F.86, A:L.99, A:I.118, A:F.119, A:L.209, A:L.209, A:F.212 Hydrogen bonds: A:A.100 Water bridges: A:F.86 Salt bridges: A:R.89 3RB.2: 13 residues within 4Å: Chain C: I.41, A.44, A.45, Q.48, F.86, R.89, L.99, A.100, I.118, F.119, C.205, L.209, F.212 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:I.41, C:Q.48, C:F.86, C:F.86, C:F.86, C:L.99, C:I.118, C:F.119, C:L.209, C:L.209, C:F.212 Hydrogen bonds: C:A.100 Water bridges: C:F.86 Salt bridges: C:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Atigadda, V.R. et al., Conformationally Defined Rexinoids and Their Efficacy in the Prevention of Mammary Cancers. J.Med.Chem. (2015)

Release Date

2015-09-16

Peptides

Retinoic acid receptor RXR-alpha: AC
Nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
G

D
G

Retinoic acid receptor RXR-alpha

Nuclear receptor coactivator 2

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