SMTL ID : 3oay.1 (1 other biounit)

A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 3 residues within 4Å: Chain A: K.107, R.108, T.109 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.107 Salt bridges: A:K.107

1 x BDF: beta-D-fructopyranose(Non-covalent)

BDF.2: 10 residues within 4Å: Chain B: A.31, H.32, T.33, K.99, G.100, L.104, S.105, D.106, N.107, D.108 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.33, B:T.33, B:K.99, B:D.106, B:D.106, B:D.108, B:D.108, B:D.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doores, K.J. et al., A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2011-01-12

Peptides

Fab 2G12, light chain: A
Fab 2G12, heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
H

Fab 2G12, light chain

Fab 2G12, heavy chain

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