SMTL ID : 6cxl.1

anti-HIV-1 Fab 2G12 in complex with glycopeptide 10F5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose

BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 14 residues within 4Å: Chain A: W.32, G.93, Y.94 Chain B: A.31, H.32, T.33, T.53, K.99, G.100, L.104, S.105, D.106, N.107, D.108 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.106 BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.2: 13 residues within 4Å: Chain C: G.93, Y.94 Chain D: A.31, H.32, T.33, T.53, K.99, G.100, L.104, S.105, D.106, N.107, D.108 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, D.N. et al., Oligomannose Glycopeptide Conjugates Elicit Antibodies Targeting the Glycan Core Rather than Its Extremities. ACS Cent Sci (2019)

Release Date

2019-02-20

Peptides

anti-HIV-1 Fab 2G12 light chain: AC
anti-HIV-1 Fab 2G12 heavy chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

C
K

B
H

D
M

anti-HIV-1 Fab 2G12 light chain

anti-HIV-1 Fab 2G12 heavy chain

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