SMTL ID : 3oay.2 (1 other biounit)

A non-self sugar mimic of the HIV glycan shield shows enhanced antigenicity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BDF: beta-D-fructopyranose(Non-covalent)

BDF.1: 9 residues within 4Å: Chain A: A.31, H.32, T.33, K.99, G.100, S.105, D.106, N.107, D.108 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.33, A:T.33, A:K.99, A:D.106, A:D.106, A:D.108, A:D.108

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 4 residues within 4Å: Chain B: Y.49, L.54, K.55, T.56 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.49, B:T.56 Salt bridges: B:K.55, B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doores, K.J. et al., A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2011-01-12

Peptides

Fab 2G12, heavy chain: A
Fab 2G12, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
L

Fab 2G12, heavy chain

Fab 2G12, light chain

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