SMTL ID : 3oh3.1

Protein structure of USP from L. major bound to URIDINE-5'-DIPHOSPHATE -Arabinose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x UAD: [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2S,3R,4S,5S)-3,4,5-trihydroxytetrahydro-2H-pyran-2-yl dihydrogen diphosphate(Non-covalent)

UAD.1: 20 residues within 4Å: Chain A: V.120, A.121, G.122, G.123, M.168, Q.196, P.221, G.223, H.224, Q.270, D.271, I.307, G.308, N.325, E.327, Y.328, S.358, V.359, N.360, Q.407 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.122, A:G.123, A:Q.196, A:Q.196, A:G.223, A:H.224, A:Q.270, A:D.271, A:D.271, A:D.271, A:G.308, A:N.325, A:E.327, A:S.358, A:Q.407 Water bridges: A:K.134, A:K.134, A:K.134, A:E.327, A:S.358 Salt bridges: A:H.224, A:H.224

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: M.54, D.171, K.195, G.197, Q.198, R.219 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.171, A:K.195, A:Q.198 GOL.3: 2 residues within 4Å: Chain A: K.601, T.603 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.601, A:K.601

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dickmanns, A. et al., Structural basis for the broad substrate range of the UDP-sugar pyrophosphorylase from Leishmania major. J.Mol.Biol. (2011)

Release Date

2010-11-17

Peptides

UDP-sugar pyrophosphorylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-sugar pyrophosphorylase

Related Entries With Identical Sequence