SMTL ID : 3omc.1 (1 other biounit)

Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R4me2s

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x GLY- 2MR- ALA- ARG- ALA- ARG- ALA: SYNTHETIC PEPTIDE(Non-covalent)

GLY-2MR-ALA-ARG-ALA-ARG-ALA.1: 14 residues within 4Å: Chain A: F.37, E.40, Q.50, V.52, G.55, T.56, E.59, F.91, D.93, Y.97, Y.114, Y.117, N.119, N.174 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.37, A:T.56, A:Y.117, A:N.174 Hydrogen bonds: A:Q.50, A:N.119 Water bridges: A:G.55, A:E.59, A:E.59, A:Y.97 Salt bridges: A:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-15

Peptides

Staphylococcal nuclease domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Staphylococcal nuclease domain-containing protein 1

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