SMTL ID : 3omg.1 (1 other biounit)

Structure of human SND1 extended tudor domain in complex with the symmetrically dimethylated arginine PIWIL1 peptide R14me2s

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x GLY- ARG- ALA- 2MR- GLY- GLN: dimethylated arginine peptide R14me2s(Non-covalent)

GLY-ARG-ALA-2MR-GLY-GLN.1: 12 residues within 4Å: Chain A: F.37, E.40, V.52, F.91, V.92, D.93, Y.97, Y.114, Y.117, N.119, N.174, Q.176 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.37, A:N.174 Hydrogen bonds: A:N.119, A:Q.176, A:Q.176 Water bridges: A:V.92, A:Y.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Structural basis for recognition of arginine methylated Piwi proteins by the extended Tudor domain. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-09-08

Peptides

Staphylococcal nuclease domain-containing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Staphylococcal nuclease domain-containing protein 1

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