SMTL ID : 3ouu.1

Crystal Structure of Biotin Carboxylase-beta-gamma-ATP Complex from Campylobacter jejuni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: Y.36, K.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.41, A:K.41 Water bridges: A:K.41 GOL.2: 3 residues within 4Å: Chain A: W.186, S.187, S.190 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.187 GOL.7: 5 residues within 4Å: Chain A: D.42, K.47, Y.375 Chain B: K.359, I.361 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.42, B:K.359 GOL.8: 3 residues within 4Å: Chain B: Y.36, K.41, L.46 No protein-ligand interaction detected (PLIP)

4 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: E.292, N.294 Ligands: CA.4, ANP.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.292, A:E.292, H2O.6 CA.4: 4 residues within 4Å: Chain A: E.279, E.292 Ligands: CA.3, ANP.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.279, A:E.279, A:E.292, H2O.2 CA.9: 4 residues within 4Å: Chain B: E.279, E.292 Ligands: CA.10, ANP.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.279, B:E.279, B:E.292, H2O.19 CA.10: 4 residues within 4Å: Chain B: E.292, N.294 Ligands: CA.9, ANP.11 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.292, B:E.292, H2O.19, H2O.22

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.5: 21 residues within 4Å: Chain A: K.120, I.135, I.160, K.162, G.167, G.168, G.169, M.172, E.204, K.205, Y.206, I.207, H.212, Q.236, H.239, E.279, L.281, E.292, T.440 Ligands: CA.3, CA.4 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.167, A:G.168, A:G.169, A:E.204, A:I.207, A:H.212, A:Q.236, A:Q.236 Water bridges: A:K.120, A:K.120, A:Y.206, A:E.279, A:R.296 Salt bridges: A:K.120, A:K.162 ANP.11: 22 residues within 4Å: Chain B: K.120, I.135, I.160, K.162, G.166, G.167, G.168, G.169, M.172, E.204, K.205, Y.206, I.207, H.212, Q.236, H.239, E.279, L.281, E.292, T.440 Ligands: CA.9, CA.10 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.167, B:G.168, B:G.169, B:R.170, B:E.204, B:E.204, B:I.207, B:Q.236, B:T.440 Water bridges: B:K.162, B:H.212, B:Q.236, B:E.279, B:R.296 Salt bridges: B:K.120, B:K.162

2 x CAC: CACODYLATE ION(Non-covalent)

CAC.6: 6 residues within 4Å: Chain A: M.117, S.118, K.120, A.164, A.165, G.166 No protein-ligand interaction detected (PLIP) CAC.12: 7 residues within 4Å: Chain B: E.91, M.117, S.118, K.120, A.164, A.165, G.166 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.91, B:T.295

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.13: 4 residues within 4Å: Chain B: D.346, S.347, K.418, T.419 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.346, B:S.347, B:T.419 Water bridges: B:S.347, B:T.419

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Biotin Carboxylase-beta-gamma-ATP Complex from Campylobacter jejuni. TO BE PUBLISHED

Release Date

2010-10-20

Peptides

Biotin carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Biotin carboxylase

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