SMTL ID : 3ouz.2 (2 other biounits)

Crystal Structure of Biotin Carboxylase-ADP complex from Campylobacter jejuni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.27, M.28, D.311, E.314 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.27, A:D.311, A:D.311 Water bridges: A:E.314, A:E.314 GOL.2: 3 residues within 4Å: Chain A: Y.36, K.41, L.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.36 Water bridges: A:L.46, A:S.52 GOL.3: 3 residues within 4Å: Chain A: I.98, K.101, H.102 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.102 GOL.4: 8 residues within 4Å: Chain A: K.124, Q.125, Q.128, V.134, I.135, P.136, G.137, S.138 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.124, A:G.137, A:S.138 Water bridges: A:G.140, A:G.140 GOL.5: 3 residues within 4Å: Chain A: W.186, S.187, S.190 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.187 GOL.9: 4 residues within 4Å: Chain A: L.116, V.126, R.129, A.269 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.129, A:R.129 Water bridges: A:I.270

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 22 residues within 4Å: Chain A: K.120, I.135, I.160, K.162, G.166, G.167, G.168, G.169, M.172, E.204, K.205, Y.206, I.207, H.212, Q.236, H.239, E.279, L.281, I.291, E.292, T.440 Ligands: MG.7 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.166, A:G.169, A:E.204, A:E.204, A:I.207, A:H.212, A:Q.236, A:Q.236, A:T.440 Water bridges: A:K.120, A:G.168, A:G.168, A:G.168, A:R.170, A:E.279, A:N.294 Salt bridges: A:K.120, A:K.120, A:K.162

1 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 3 residues within 4Å: Chain A: E.279, E.292 Ligands: ADP.6 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.279, A:E.292, H2O.14, H2O.14

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 4 residues within 4Å: Chain A: D.346, S.347, K.418, T.419 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.347, A:T.419 Water bridges: A:I.417, A:T.419, A:T.419, A:D.422 FMT.11: 4 residues within 4Å: Chain A: Q.240, K.241, R.341 Ligands: SRT.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.241, A:R.341, A:R.341 Water bridges: A:Q.240

1 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.10: 11 residues within 4Å: Chain A: Y.86, Q.240, K.241, E.279, N.294, R.296, Q.298, V.299, E.300, R.341 Ligands: FMT.11 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.241, A:N.294, A:R.296, A:Q.298, A:V.299, A:E.300, A:R.341, A:R.341 Water bridges: A:G.168, A:Q.240, A:Q.240, A:K.241 Salt bridges: A:K.241, A:K.241, A:R.296, A:R.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Biotin Carboxylase-ADP complex from Campylobacter jejuni. TO BE PUBLISHED

Release Date

2010-10-13

Peptides

Biotin carboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Biotin carboxylase

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