SMTL ID : 3ouz.3 (2 other biounits)

Crystal Structure of Biotin Carboxylase-ADP complex from Campylobacter jejuni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: K.359, I.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.359 GOL.3: 3 residues within 4Å: Chain A: E.27, D.311, E.314 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.27, A:D.311 Water bridges: A:E.314 GOL.4: 4 residues within 4Å: Chain A: Y.36, K.41, L.46, S.52 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.46, A:S.52, A:S.52 Water bridges: A:Y.36 GOL.5: 3 residues within 4Å: Chain A: I.98, K.101, H.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.101, A:H.102 GOL.6: 3 residues within 4Å: Chain A: K.268, A.269, G.271 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.271 GOL.11: 5 residues within 4Å: Chain A: S.415, G.416, I.417, K.418 Ligands: GOL.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.416 GOL.13: 7 residues within 4Å: Chain A: E.345, D.346, S.347, K.418, T.419, D.422 Ligands: GOL.11 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:E.345, A:S.347, A:T.419, A:D.422, A:D.422 Water bridges: A:S.347, A:I.414, A:I.417, A:T.419

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: G.309 Ligands: MLT.10 No protein-ligand interaction detected (PLIP) FMT.7: 3 residues within 4Å: Chain A: L.413, I.414, K.421 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.414, A:K.421 Water bridges: A:I.414 FMT.14: 4 residues within 4Å: Chain A: Q.240, K.241, R.341 Ligands: TLA.12 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.241, A:R.341, A:R.341 Water bridges: A:Q.240, A:Q.240, A:Q.240, A:Q.240, A:Q.240, A:K.241

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.8: 22 residues within 4Å: Chain A: K.120, I.135, I.160, K.162, G.166, G.167, G.168, G.169, M.172, E.204, K.205, Y.206, I.207, H.212, Q.236, H.239, E.279, L.281, I.291, E.292, T.440 Ligands: MG.9 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.167, A:G.169, A:E.204, A:I.207, A:H.212, A:Q.236, A:Q.236 Water bridges: A:K.120, A:G.168, A:G.168, A:R.170, A:Y.206, A:E.279, A:N.294, A:N.294, A:N.294 Salt bridges: A:K.120, A:K.120, A:K.162

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 3 residues within 4Å: Chain A: E.279, E.292 Ligands: ADP.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.279, A:E.292, H2O.14, H2O.14

1 x MLT: D-MALATE(Non-covalent)

MLT.10: 4 residues within 4Å: Chain A: M.306, N.367, W.394 Ligands: FMT.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.367 Water bridges: A:N.367

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.12: 10 residues within 4Å: Chain A: Y.86, Q.240, K.241, E.279, R.296, Q.298, V.299, E.300, R.341 Ligands: FMT.14 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Q.240, A:K.241, A:E.279, A:R.296, A:R.296, A:Q.298, A:V.299, A:R.341, A:R.341 Water bridges: A:K.241 Salt bridges: A:K.241, A:R.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Biotin Carboxylase-ADP complex from Campylobacter jejuni. TO BE PUBLISHED

Release Date

2010-10-13

Peptides

Biotin carboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Biotin carboxylase

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