- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: D.57, W.375, E.378, P.379
- Chain B: R.63, D.67, V.68, E.92
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:D.57, A:D.57, A:E.378, B:R.63, B:E.92
- Water bridges: A:D.57, A:A.380, B:E.92, B:N.96
GOL.4: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.210, A:D.210
GOL.11: 8 residues within 4Å:- Chain A: H.99, R.100, A.261, D.264
- Chain B: R.100, L.256, A.261, D.264
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:H.99, A:R.100, A:R.100, A:D.264, B:R.100, B:R.100, B:D.264
GOL.12: 7 residues within 4Å:- Chain A: R.63, D.67, V.68, E.92
- Chain B: D.57, E.378, P.379
8 PLIP interactions:5 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:D.57, B:E.378, A:R.63, A:E.92
- Water bridges: B:D.57, B:L.58, B:A.380, A:N.96
- 6 x ACY: ACETIC ACID(Non-functional Binders)
ACY.5: 2 residues within 4Å:- Chain A: G.207, R.208
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.208
- Water bridges: A:H.209
ACY.6: 5 residues within 4Å:- Chain A: W.148, D.149, R.176, A.177, D.181
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.149, A:A.177
- Water bridges: A:L.150, A:R.176
- Salt bridges: A:R.176
ACY.7: 7 residues within 4Å:- Chain A: S.25, A.27, K.30, Y.147, K.173, N.203, F.306
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:A.27
- Hydrogen bonds: A:S.25, A:Y.147, A:N.203
- Water bridges: A:S.25, A:K.30, A:K.173, A:K.173, A:K.173, A:K.173
- Salt bridges: A:K.30, A:K.173
ACY.13: 2 residues within 4Å:- Chain B: R.22, P.379
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:P.379
- Water bridges: B:R.22, B:R.22, B:N.32, B:N.32
- Salt bridges: B:R.22
ACY.14: 1 residues within 4Å:- Chain B: H.298
1 PLIP interactions:1 interactions with chain B- Water bridges: B:A.300
ACY.15: 6 residues within 4Å:- Chain B: W.148, D.149, R.176, A.177, K.180, D.181
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:K.180
- Hydrogen bonds: B:D.149, B:A.177
- Water bridges: B:W.148, B:A.177
- Salt bridges: B:R.176
- 1 x DXL: D-xylaric acid(Non-covalent)
DXL.10: 15 residues within 4Å:- Chain B: S.25, A.27, K.30, S.144, Y.147, K.171, K.173, D.201, N.203, E.227, E.254, H.304, F.306, E.329
- Ligands: MG.8
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.25, B:K.30, B:S.144, B:K.173, B:N.203
- Water bridges: B:S.25, B:Y.147, B:H.304, B:F.306
- Salt bridges: B:K.30, B:K.171, B:K.173, B:K.173, B:H.304
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg and m-Xylarate. To be Published
- Release Date
- 2011-09-28
- Peptides
- Putative mandelate racemase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ACY: ACETIC ACID(Non-functional Binders)
- 1 x DXL: D-xylaric acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., Crystal structure of enolase superfamily member from Bordetella bronchiseptica complexed with Mg and m-Xylarate. To be Published
- Release Date
- 2011-09-28
- Peptides
- Putative mandelate racemase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B