SMTL ID : 3pz3.1

Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS-analogue 14

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.237, C.239, H.289 Ligands: PZ3.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.237, B:D.237, B:C.239, B:H.289

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.63, M.65 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.63, B:M.65

1 x PZ3: 4-({(3R)-7-(5-formylfuran-2-yl)-4-[(4-methoxyphenyl)sulfonyl]-1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5-tetrahydro-1H-1,4-benzodiazepin-3-yl}methyl)phenyl benzylcarbamate(Non-covalent)

PZ3.3: 22 residues within 4Å: Chain A: D.63 Chain B: Y.29, Y.43, L.44, G.48, Y.50, W.51, L.95, L.98, Q.102, F.146, Y.194, D.237, C.239, W.243, P.287, F.288, H.289, F.292, F.312, C.313 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.44, B:W.51, B:L.98, B:F.146, B:Y.194, B:W.243, B:W.243, B:W.243, B:F.288, B:F.288, B:F.292 Hydrogen bonds: B:Y.29 pi-Stacking: B:F.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bon, R.S. et al., Structure-Guided Development of Selective RabGGTase Inhibitors. Angew.Chem.Int.Ed.Engl. (2011)

Release Date

2011-05-11

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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