SMTL ID : 3q2g.1 (1 other biounit)

Adamts1 in complex with a novel N-hydroxyformamide inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x QGF: N-[(2S,4S)-1-({4-[(2,4-dichlorobenzyl)oxy]piperidin-1-yl}sulfonyl)-4-(5-fluoropyrimidin-2-yl)-2-methylpentan-2-yl]-N-hydroxyformamide(Non-covalent)

QGF.1: 17 residues within 4Å: Chain A: T.114, L.115, G.116, M.117, A.118, V.120, F.142, T.143, H.146, E.147, H.150, H.156, A.176, S.177, L.179, F.271 Ligands: ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.114, A:F.142, A:F.271 Hydrogen bonds: A:L.115, A:G.116 Halogen bonds: A:T.143

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.146, H.150, H.156 Ligands: QGF.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.146, A:H.150, A:H.156

4 x CD: CADMIUM ION(Non-covalent)

CD.3: 4 residues within 4Å: Chain A: E.6, D.89, D.210 Ligands: CD.6 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.6, A:D.89, A:D.210, H2O.2, H2O.3 CD.4: 3 residues within 4Å: Chain A: E.60, E.65 Ligands: NI.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.60, A:E.65 CD.6: 6 residues within 4Å: Chain A: E.6, D.89, D.96, C.207, D.210 Ligands: CD.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.6, A:D.89, A:D.96, A:C.207, A:D.210 CD.7: 1 residues within 4Å: Chain A: D.228 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.228, A:D.228, H2O.3

7 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 1 residues within 4Å: Chain A: H.25 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.25 NI.8: 1 residues within 4Å: Chain A: H.58 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.58, H2O.3, H2O.3 NI.9: 3 residues within 4Å: Chain A: E.60, E.65 Ligands: CD.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.65, A:E.65 NI.10: 1 residues within 4Å: Chain A: H.173 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.173 NI.11: 2 residues within 4Å: Chain A: E.239, D.240 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.240 NI.12: 1 residues within 4Å: Chain A: H.243 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.243 NI.13: 1 residues within 4Å: Chain A: H.270 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.270

1 x MG: MAGNESIUM ION(Non-covalent)

MG.14: 3 residues within 4Å: Chain A: H.184, D.275, N.287 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.275

1 x NA: SODIUM ION(Non-functional Binders)

NA.15: 5 residues within 4Å: Chain A: D.105, L.106, C.112, T.114, E.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.106, A:E.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Savi, C. et al., The design and synthesis of novel N-hydroxyformamide inhibitors of ADAM-TS4 for the treatment of osteoarthritis. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-03-30

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 1

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