SMTL ID : 3q2g.2 (1 other biounit)

Adamts1 in complex with a novel N-hydroxyformamide inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x QGF: N-[(2S,4S)-1-({4-[(2,4-dichlorobenzyl)oxy]piperidin-1-yl}sulfonyl)-4-(5-fluoropyrimidin-2-yl)-2-methylpentan-2-yl]-N-hydroxyformamide(Non-covalent)

QGF.1: 17 residues within 4Å: Chain A: T.114, L.115, G.116, M.117, A.118, V.120, Q.139, F.142, T.143, H.146, E.147, H.150, H.156, A.176, S.177, L.179 Ligands: ZN.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.114, A:F.142 Hydrogen bonds: A:L.115, A:G.116 Salt bridges: A:E.147 Halogen bonds: A:T.143

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.146, H.150, H.156 Ligands: QGF.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.146, A:H.150, A:H.156

7 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 1 residues within 4Å: Chain A: H.58 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.58, H2O.2 NI.4: 2 residues within 4Å: Chain A: E.239, D.240 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.239, A:D.240 NI.6: 6 residues within 4Å: Chain A: E.6, D.89, D.96, C.207, D.210 Ligands: CD.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.6, A:D.89, A:D.96, A:D.96, A:C.207 NI.7: 1 residues within 4Å: Chain A: H.173 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.173, H2O.1 NI.8: 1 residues within 4Å: Chain A: H.204 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.204 NI.9: 1 residues within 4Å: Chain A: H.243 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.243 NI.10: 2 residues within 4Å: Chain A: L.182, H.184 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.184

1 x CD: CADMIUM ION(Non-covalent)

CD.5: 4 residues within 4Å: Chain A: E.6, D.89, D.210 Ligands: NI.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.6, A:E.6, A:D.89, A:D.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Savi, C. et al., The design and synthesis of novel N-hydroxyformamide inhibitors of ADAM-TS4 for the treatment of osteoarthritis. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-03-30

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

A disintegrin and metalloproteinase with thrombospondin motifs 1

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