SMTL ID : 3q2h.2 (1 other biounit)

Adamts1 in complex with N-hydroxyformamide inhibitors of ADAM-TS4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.146, H.150, H.156 Ligands: QHF.11 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.146, A:H.150, A:H.156

5 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: E.239, D.240 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.239, A:E.239, A:D.240, H2O.1 NI.4: 5 residues within 4Å: Chain A: E.6, D.89, D.96, C.207, D.210 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.6, A:D.89, A:D.96, A:D.96, A:C.207 NI.6: 1 residues within 4Å: Chain A: H.173 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.173, H2O.1 NI.7: 2 residues within 4Å: Chain A: N.202, H.204 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.204 NI.8: 1 residues within 4Å: Chain A: H.243 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.243

1 x CD: CADMIUM ION(Non-covalent)

CD.3: 4 residues within 4Å: Chain A: E.6, D.89, D.210, K.211 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.6, A:E.6, A:D.89, A:D.210, A:D.210

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: H.184, D.275, N.287 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.275

2 x NA: SODIUM ION(Non-functional Binders)

NA.9: 6 residues within 4Å: Chain A: D.105, L.106, C.112, T.114, E.134 Ligands: NA.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.106, A:C.112, A:T.114 NA.10: 3 residues within 4Å: Chain A: D.105, C.112 Ligands: NA.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.112

1 x QHF: N-[(2S,4S)-1-({4-[2-(3,5-dimethyl-1,2-oxazol-4-yl)ethyl]piperidin-1-yl}sulfonyl)-4-(5-fluoropyrimidin-2-yl)-2-methylpentan-2-yl]-N-hydroxyformamide(Non-covalent)

QHF.11: 19 residues within 4Å: Chain A: T.114, L.115, G.116, M.117, A.118, V.120, Q.139, F.142, T.143, H.146, E.147, H.150, H.156, M.174, A.176, S.177, L.179, F.271 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.142 Hydrogen bonds: A:L.115, A:G.116 Salt bridges: A:E.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Savi, C. et al., The design and synthesis of novel N-hydroxyformamide inhibitors of ADAM-TS4 for the treatment of osteoarthritis. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-03-30

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

A disintegrin and metalloproteinase with thrombospondin motifs 1

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