SMTL ID : 3qbw.1

Crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-actetylmuramic acid kinase (ANMK) bound to adenosine diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: M.8, G.10, T.11, S.12, D.14, G.164, G.165, N.187, D.191, F.202, D.203, R.204, D.205, G.291, G.292, G.293, F.295, N.296 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.10, A:G.10, A:T.11, A:T.11, A:T.11, A:S.12, A:S.12, A:S.12, A:G.165, A:D.191, A:D.205, A:G.292 Water bridges: A:N.162, A:N.296 ADP.3: 17 residues within 4Å: Chain B: G.10, T.11, S.12, D.14, G.164, G.165, N.187, D.191, F.202, D.203, R.204, D.205, G.291, G.292, G.293, F.295, N.296 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.10, B:G.10, B:T.11, B:T.11, B:S.12, B:S.12, B:L.13, B:G.165, B:D.191, B:D.205, B:G.292 Water bridges: B:G.15

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: R.129, A.140, P.141, L.142, V.143, N.168, E.326 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.142, A:V.143, A:N.168 Salt bridges: A:R.129 SO4.4: 7 residues within 4Å: Chain B: R.129, A.140, P.141, L.142, V.143, N.168, E.326 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.142, B:V.143, B:N.168 Water bridges: B:N.168, B:E.326 Salt bridges: B:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bacik, J.P. et al., Molecular Basis of 1,6-Anhydro Bond Cleavage and Phosphoryl Transfer by Pseudomonas aeruginosa 1,6-Anhydro-N-acetylmuramic Acid Kinase. J.Biol.Chem. (2011)

Release Date

2011-02-02

Peptides

Anhydro-N-acetylmuramic acid kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Anhydro-N-acetylmuramic acid kinase

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