SMTL ID : 3qm4.1

Human Cytochrome P450 (CYP) 2D6 - Prinomastat Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 24 residues within 4Å: Chain A: R.79, V.97, F.98, W.106, R.110, L.280, A.283, G.284, T.287, T.288, T.291, Q.342, V.352, H.354, L.377, P.413, F.414, S.415, R.419, C.421, L.422, G.423, L.426 Ligands: PN0.2 20 PLIP interactions: 20 interactions with chain A, Hydrophobic interactions: A:V.97, A:F.98, A:F.98, A:L.280, A:A.283, A:V.352, A:L.377, A:F.414, A:F.414, A:L.422, A:L.426 Hydrogen bonds: A:F.98, A:S.415, A:S.415 Salt bridges: A:R.79, A:R.79, A:R.110, A:H.354, A:R.419 Metal complexes: A:C.421 HEM.3: 23 residues within 4Å: Chain B: R.79, V.97, F.98, W.106, R.110, L.280, A.283, G.284, T.287, T.288, T.291, I.347, V.352, H.354, L.377, P.413, F.414, S.415, R.419, C.421, L.422, G.423 Ligands: PN0.4 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:V.97, B:F.98, B:F.98, B:A.283, B:I.347, B:V.352, B:L.377, B:F.414 Hydrogen bonds: B:F.98, B:S.415, B:S.415 Salt bridges: B:R.79, B:R.79, B:R.110, B:H.354, B:R.419 pi-Stacking: B:F.414 Metal complexes: B:C.421

2 x PN0: Prinomastat(Non-covalent)

PN0.2: 15 residues within 4Å: Chain A: L.88, F.98, G.190, L.191, E.194, Q.222, F.225, L.226, A.278, D.279, S.282, A.283, T.287, F.461 Ligands: HEM.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.98, A:F.225, A:L.226, A:A.278, A:A.283, A:T.287, A:F.461 Hydrogen bonds: A:E.194, A:Q.222, A:S.282, A:S.282 Salt bridges: A:E.194 pi-Stacking: A:F.98 PN0.4: 16 residues within 4Å: Chain B: L.88, F.90, F.98, G.190, L.191, E.194, Q.222, A.278, D.279, S.282, A.283, V.286, T.287, F.461, L.462 Ligands: HEM.3 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.98, B:A.278, B:A.283, B:V.286, B:L.462 Hydrogen bonds: B:Q.222, B:S.282, B:S.282 Salt bridges: B:E.194

1 x NI: NICKEL (II) ION(Non-covalent)

NI.5: 3 residues within 4Å: Chain B: H.236, D.248, E.251 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.236, B:D.248, B:E.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, A. et al., Crystal Structure of Human Cytochrome P450 2D6 with Prinomastat Bound. J.Biol.Chem. (2012)

Release Date

2012-02-15

Peptides

Cytochrome P450 2D6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytochrome P450 2D6

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