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SMTL ID : 3qmp.1

Selenium SAD structure solution of proteinase K grown in SO4-less solution and soaked in selenate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1:	3 residues within 4Å: Chain A: P.175, V.177, D.200 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:P.175, A:V.177, A:D.200, A:D.200, H₂O.166
CA.4:	1 residues within 4Å: Chain A: S.62 No protein-ligand interaction detected (PLIP)
CA.5:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
CA.6:	2 residues within 4Å: Chain A: D.165, Y.195 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:

3 residues within 4Å:

Chain A: R.189, S.191, N.263

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:N.263
Water bridges: A:R.188

1 x SE4: SELENATE ION(Non-covalent)

SE4.3:

3 residues within 4Å:

Chain A: P.7, W.8, R.185

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:W.8, A:R.185, A:R.185
Water bridges: A:A.6, A:A.6, A:A.6

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Jakoncic, J., Crystallization of macromolecules in selenate to solve the phase problem. To be Published

Release Date

2012-01-18

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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