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SMTL ID : 3qvf.1
Crystal structure of fosfomycin resistance kinase FomA from Streptomyces wedmorensis complexed with MgADP and fosfomycin vanadate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-dimer
Ligands
2 x
ADP
:
ADENOSINE-5'-DIPHOSPHATE
(Non-covalent)
ADP.1:
21 residues within 4Å:
Chain A:
K.29
,
G.31
,
G.32
,
S.33
,
K.38
,
L.189
,
T.190
,
D.191
,
V.192
,
G.194
,
I.195
,
V.196
,
A.220
,
L.221
,
W.222
,
D.228
,
A.232
,
M.233
,
K.236
Ligands:
FV1.2
,
MG.3
25
PLIP interactions
:
25 interactions with chain A
Hydrogen bonds:
A:S.33
,
A:S.33
,
A:L.189
,
A:T.190
,
A:D.191
,
A:V.196
,
A:V.196
,
A:W.222
,
A:D.228
,
A:M.233
Water bridges:
A:K.29
,
A:K.29
,
A:K.38
,
A:K.38
,
A:A.232
,
A:K.236
,
A:K.236
Salt bridges:
A:K.29
,
A:K.38
,
A:K.38
,
A:K.236
,
A:K.236
pi-Stacking:
A:W.222
,
A:W.222
,
A:W.222
ADP.4:
21 residues within 4Å:
Chain B:
K.29
,
G.31
,
G.32
,
S.33
,
K.38
,
L.189
,
T.190
,
D.191
,
V.192
,
G.194
,
I.195
,
V.196
,
A.220
,
L.221
,
W.222
,
D.228
,
A.232
,
M.233
,
K.236
Ligands:
FV1.5
,
MG.6
26
PLIP interactions
:
26 interactions with chain B
Hydrogen bonds:
B:S.33
,
B:S.33
,
B:L.189
,
B:T.190
,
B:D.191
,
B:V.196
,
B:V.196
,
B:W.222
,
B:D.228
,
B:D.228
,
B:M.233
Water bridges:
B:K.29
,
B:K.29
,
B:K.38
,
B:K.38
,
B:A.232
,
B:K.236
,
B:K.236
Salt bridges:
B:K.29
,
B:K.38
,
B:K.38
,
B:K.236
,
B:K.236
pi-Stacking:
B:W.222
,
B:W.222
,
B:W.222
2 x
FV1
:
dihydroxy{[(2R,3S)-3-methyloxiran-2-yl]phosphonato-kappaO}oxovanadium
(Non-covalent)
FV1.2:
17 residues within 4Å:
Chain A:
K.29
,
G.31
,
G.32
,
K.38
,
G.72
,
G.73
,
G.74
,
G.77
,
H.78
,
I.81
,
F.167
,
S.168
,
S.169
,
D.228
,
T.230
Ligands:
ADP.1
,
MG.3
12
PLIP interactions
:
12 interactions with chain A
Hydrogen bonds:
A:K.29
,
A:G.32
,
A:K.38
,
A:K.38
,
A:G.73
,
A:G.74
,
A:S.169
,
A:S.169
,
A:T.230
Water bridges:
A:G.154
,
A:S.168
,
A:S.168
FV1.5:
17 residues within 4Å:
Chain B:
K.29
,
G.31
,
G.32
,
K.38
,
G.72
,
G.73
,
G.74
,
G.77
,
H.78
,
I.81
,
F.167
,
S.168
,
S.169
,
D.228
,
T.230
Ligands:
ADP.4
,
MG.6
12
PLIP interactions
:
12 interactions with chain B
Hydrogen bonds:
B:K.29
,
B:G.32
,
B:K.38
,
B:K.38
,
B:G.73
,
B:G.74
,
B:S.169
,
B:S.169
Water bridges:
B:G.154
,
B:S.168
,
B:S.168
,
B:D.228
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.3:
5 residues within 4Å:
Chain A:
D.170
,
D.228
,
K.236
Ligands:
ADP.1
,
FV1.2
No protein-ligand interaction detected (PLIP)
MG.6:
5 residues within 4Å:
Chain B:
D.170
,
D.228
,
K.236
Ligands:
ADP.4
,
FV1.5
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Pakhomova, S. et al., Structural and biochemical insights into the mechanism of fosfomycin phosphorylation by fosfomycin resistance kinase FomA. Biochemistry (2011)
Release Date
2011-07-20
Peptides
FomA protein:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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FomA protein
Toggle Identical (AB)
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