SMTL ID : 3qx8.2 (2 other biounits)

Crystal structure of MID domain from hAGO2 in complex with m7GpppG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GTG: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE(Non-covalent)

GTG.1: 13 residues within 4Å: Chain A: L.85, G.87, K.88, T.89, Y.92, K.96, D.100, T.107, Q.108, C.109, Q.111, K.129, K.133 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:T.89, A:T.89, A:Q.108, A:C.109, A:Q.111 Water bridges: A:Q.111, A:Q.111 Salt bridges: A:K.96, A:K.96, A:K.96, A:K.133, A:K.133, A:K.133 pi-Stacking: A:Y.92 pi-Cation interactions: A:K.88, A:Y.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, F. et al., Structural analysis of 5'-mRNA-cap interactions with the human AGO2 MID domain. Embo Rep. (2011)

Release Date

2011-04-20

Peptides

Protein argonaute-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein argonaute-2

Related Entries With Identical Sequence