SMTL ID : 3r3g.2 (1 other biounit)

Structure of human thrombin with residues 145-150 of murine thrombin.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: L.46, P.48, N.53 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain D: L.46, P.48, N.53 No protein-ligand interaction detected (PLIP)

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: R.233, K.236 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.236, B:K.236 Water bridges: B:D.234, B:G.238 NA.3: 4 residues within 4Å: Chain A: Y.27 Chain B: Y.134 Chain C: I.28, D.29 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:Y.134, C:D.29 NA.5: 2 residues within 4Å: Chain D: R.233, K.236 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.236, D:K.236 Water bridges: D:G.238 NA.6: 4 residues within 4Å: Chain A: I.28, D.29 Chain C: Y.27 Chain D: Y.134 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzi, N. et al., Rigidification of the autolysis loop enhances Na(+) binding to thrombin. Biophys.Chem. (2011)

Release Date

2011-05-11

Peptides

Thrombin Light Chain: AC
Thrombin Heavy Chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Thrombin Light Chain

Thrombin Heavy Chain

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