SMTL ID : 6p9u.1 (3 other biounits)

Crystal structure of human thrombin mutant W215A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.3 Chain B: H.116 Chain D: E.259 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:D.3, D:E.259, B:H.116, H2O.1 ZN.3: 3 residues within 4Å: Chain B: E.259 Chain C: D.3 Chain D: H.116 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:D.3, D:H.116, B:E.259, H2O.1

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: L.46, N.53 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.46 Hydrogen bonds: B:N.53 NAG.4: 2 residues within 4Å: Chain D: L.46, N.53 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.46 Hydrogen bonds: D:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pelc, L.A. et al., Residues W215, E217 and E192 control the allosteric E*-E equilibrium of thrombin. Sci Rep (2019)

Release Date

2019-09-04

Peptides

Prothrombin: AC
Prothrombin: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Prothrombin

Prothrombin

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