SMTL ID : 3rno.3 (2 other biounits)

Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with NADP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 18 residues within 4Å: Chain A: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.90, A:N.90, A:N.91, A:N.91, A:D.94, A:G.160, A:F.161, A:S.162, A:K.164, A:K.164, A:R.168, A:R.168, A:D.189, A:D.189 Water bridges: A:G.92, A:I.158 Salt bridges: A:K.115 pi-Cation interactions: A:R.168 NAP.2: 18 residues within 4Å: Chain B: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:N.90, B:N.90, B:N.91, B:N.91, B:D.94, B:G.160, B:F.161, B:S.162, B:K.164, B:K.164, B:R.168, B:R.168, B:D.189, B:D.189 Water bridges: B:G.92, B:I.158 Salt bridges: B:K.115 pi-Cation interactions: B:R.168 NAP.3: 18 residues within 4Å: Chain C: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:N.90, C:N.90, C:N.91, C:N.91, C:D.94, C:G.160, C:F.161, C:S.162, C:K.164, C:K.164, C:R.168, C:R.168, C:D.189, C:D.189 Water bridges: C:G.92, C:I.158 Salt bridges: C:K.115 pi-Cation interactions: C:R.168 NAP.4: 18 residues within 4Å: Chain D: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:N.90, D:N.90, D:N.91, D:N.91, D:D.94, D:G.160, D:F.161, D:S.162, D:K.164, D:K.164, D:R.168, D:R.168, D:D.189 Water bridges: D:G.92, D:I.158 Salt bridges: D:K.115 pi-Cation interactions: D:R.168 NAP.5: 18 residues within 4Å: Chain E: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 17 PLIP interactions: 17 interactions with chain E Hydrogen bonds: E:N.90, E:N.90, E:N.91, E:N.91, E:D.94, E:G.160, E:F.161, E:S.162, E:K.164, E:K.164, E:R.168, E:R.168, E:D.189 Water bridges: E:G.92, E:I.158 Salt bridges: E:K.115 pi-Cation interactions: E:R.168 NAP.6: 18 residues within 4Å: Chain F: P.88, G.89, N.90, N.91, D.94, K.115, F.159, G.160, F.161, S.162, F.163, K.164, G.165, D.166, V.167, R.168, D.189, L.212 17 PLIP interactions: 17 interactions with chain F Hydrogen bonds: F:N.90, F:N.90, F:N.91, F:N.91, F:D.94, F:G.160, F:F.161, F:S.162, F:K.164, F:K.164, F:R.168, F:R.168, F:D.189 Water bridges: F:G.92, F:I.158 Salt bridges: F:K.115 pi-Cation interactions: F:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)

Release Date

2012-05-09

Peptides

Apolipoprotein A-I-binding protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Apolipoprotein A-I-binding protein

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