SMTL ID : 3ro7.3 (2 other biounits)

Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymine.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x TDR: THYMINE(Non-covalent)

TDR.1: 8 residues within 4Å: Chain A: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.39, A:D.40, A:T.213 Hydrogen bonds: A:D.40, A:D.189 Water bridges: A:N.91 pi-Stacking: A:F.161 TDR.3: 8 residues within 4Å: Chain B: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.39, B:D.40, B:T.213 Hydrogen bonds: B:D.40, B:D.189 Water bridges: B:N.91 pi-Stacking: B:F.161 TDR.5: 8 residues within 4Å: Chain C: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:V.39, C:D.40, C:T.213 Hydrogen bonds: C:D.40, C:D.189 Water bridges: C:N.91 pi-Stacking: C:F.161 TDR.7: 8 residues within 4Å: Chain D: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:V.39, D:D.40, D:T.213 Hydrogen bonds: D:D.189 Water bridges: D:N.91 pi-Stacking: D:F.161 TDR.9: 8 residues within 4Å: Chain E: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:V.39, E:D.40, E:T.213 Hydrogen bonds: E:D.189 Water bridges: E:N.91 pi-Stacking: E:F.161 TDR.11: 8 residues within 4Å: Chain F: A.36, V.39, D.40, F.161, D.189, L.212, T.213, K.216 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:V.39, F:D.40, F:T.213 Hydrogen bonds: F:D.189 Water bridges: F:N.91 pi-Stacking: F:F.161

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.90, A:N.91, A:G.160, A:S.162 Water bridges: A:N.91 SO4.4: 5 residues within 4Å: Chain B: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.90, B:N.91, B:G.160, B:S.162 Water bridges: B:N.91 SO4.6: 5 residues within 4Å: Chain C: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.90, C:N.91, C:G.160, C:S.162 Water bridges: C:N.91 SO4.8: 5 residues within 4Å: Chain D: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.90, D:N.91, D:G.160, D:S.162 Water bridges: D:N.91 SO4.10: 5 residues within 4Å: Chain E: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.90, E:N.91, E:G.160, E:S.162 Water bridges: E:N.91 SO4.12: 5 residues within 4Å: Chain F: G.89, N.90, N.91, G.160, S.162 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:N.90, F:N.91, F:G.160, F:S.162 Water bridges: F:N.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)

Release Date

2012-07-18

Peptides

Apolipoprotein A-I-binding protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Apolipoprotein A-I-binding protein

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