SMTL ID : 3rog.2 (2 other biounits)

Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Thymidine 3'-monophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x T3P: THYMIDINE-3'-PHOSPHATE(Non-covalent)

T3P.1: 15 residues within 4Å: Chain A: A.36, V.39, D.40, L.43, F.44, L.54, M.55, N.90, D.94, F.161, D.189, L.212, T.213, K.216, F.233 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.39, A:F.161, A:T.213 Hydrogen bonds: A:N.90, A:D.189 Water bridges: A:F.161 T3P.3: 15 residues within 4Å: Chain B: A.36, V.39, D.40, L.43, F.44, L.54, M.55, N.90, D.94, F.161, D.189, L.212, T.213, K.216, F.233 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.39, B:F.161, B:T.213 Hydrogen bonds: B:D.40, B:N.90, B:D.189 Water bridges: B:F.161

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.89, N.90, N.91, G.160, S.162 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.90, A:N.91, A:G.160, A:S.162 Water bridges: A:G.89, A:N.91 SO4.4: 5 residues within 4Å: Chain B: G.89, N.90, N.91, G.160, S.162 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.90, B:N.91, B:G.160, B:S.162 Water bridges: B:G.89, B:N.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)

Release Date

2012-07-18

Peptides

Apolipoprotein A-I-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Apolipoprotein A-I-binding protein

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