- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.2: 19 residues within 4Å:- Chain A: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, T.217, G.218, L.221, H.246
- Chain C: D.22, A.23, S.25, K.27
- Ligands: MG.1
14 PLIP interactions:9 interactions with chain A, 5 interactions with chain C- Hydrogen bonds: A:G.190, A:T.193, A:T.217, A:G.218, C:A.23, C:S.25
- Water bridges: A:K.189, A:T.193, A:T.193, A:G.216, C:K.27, C:K.27
- Salt bridges: A:K.189, C:K.27
AMP.5: 19 residues within 4Å:- Chain B: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, T.217, G.218, L.221, H.246
- Chain D: D.22, A.23, S.25, K.27
- Ligands: MG.4
14 PLIP interactions:9 interactions with chain B, 5 interactions with chain D- Hydrogen bonds: B:G.190, B:T.193, B:T.217, B:G.218, D:A.23, D:S.25
- Water bridges: B:K.189, B:T.193, B:T.193, B:G.216, D:K.27, D:K.27
- Salt bridges: B:K.189, D:K.27
AMP.8: 19 residues within 4Å:- Chain B: D.22, A.23, S.25, K.27
- Chain C: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, T.217, G.218, L.221, H.246
- Ligands: MG.7
14 PLIP interactions:9 interactions with chain C, 5 interactions with chain B- Hydrogen bonds: C:G.190, C:T.193, C:T.217, C:G.218, B:A.23, B:S.25
- Water bridges: C:K.189, C:T.193, C:T.193, C:G.216, B:K.27, B:K.27
- Salt bridges: C:K.189, B:K.27
AMP.11: 19 residues within 4Å:- Chain A: D.22, A.23, S.25, K.27
- Chain D: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, T.217, G.218, L.221, H.246
- Ligands: MG.10
14 PLIP interactions:9 interactions with chain D, 5 interactions with chain A- Hydrogen bonds: D:G.190, D:T.193, D:T.217, D:G.218, A:A.23, A:S.25
- Water bridges: D:K.189, D:T.193, D:T.193, D:G.216, A:K.27, A:K.27
- Salt bridges: D:K.189, A:K.27
- 4 x NPW: BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)
NPW.3: 24 residues within 4Å:- Chain A: M.42, G.44, A.45, G.105, P.106, G.107, L.108, A.132, G.133, H.152, P.153, G.154, V.164, Q.168, G.216, D.219
- Chain C: H.26, K.27, G.28, K.60, P.78, E.79, A.80, T.81
35 PLIP interactions:19 interactions with chain A, 16 interactions with chain C- Hydrogen bonds: A:G.44, A:A.45, A:G.105, A:G.107, A:L.108, A:G.133, A:G.154, A:G.216, A:D.219, A:D.219, C:P.78
- Water bridges: A:E.155, A:E.155, A:R.158, A:R.158, A:Q.168, A:Q.168, A:N.191, C:S.25, C:H.26, C:H.26, C:K.27, C:G.28, C:K.60, C:K.60
- Salt bridges: A:H.152, A:H.152, C:H.26, C:K.27, C:K.27, C:K.60, C:K.60
- Hydrophobic interactions: C:T.81
- pi-Stacking: C:H.26, C:H.26
NPW.6: 24 residues within 4Å:- Chain B: M.42, G.44, A.45, G.105, P.106, G.107, L.108, A.132, G.133, H.152, P.153, G.154, V.164, Q.168, G.216, D.219
- Chain D: H.26, K.27, G.28, K.60, P.78, E.79, A.80, T.81
35 PLIP interactions:19 interactions with chain B, 16 interactions with chain D- Hydrogen bonds: B:G.44, B:A.45, B:G.105, B:G.107, B:L.108, B:G.133, B:G.154, B:G.216, B:D.219, B:D.219, D:P.78
- Water bridges: B:E.155, B:E.155, B:R.158, B:R.158, B:Q.168, B:Q.168, B:N.191, D:S.25, D:H.26, D:H.26, D:K.27, D:G.28, D:K.60, D:K.60
- Salt bridges: B:H.152, B:H.152, D:H.26, D:K.27, D:K.27, D:K.60, D:K.60
- Hydrophobic interactions: D:T.81
- pi-Stacking: D:H.26, D:H.26
NPW.9: 24 residues within 4Å:- Chain B: H.26, K.27, G.28, K.60, P.78, E.79, A.80, T.81
- Chain C: M.42, G.44, A.45, G.105, P.106, G.107, L.108, A.132, G.133, H.152, P.153, G.154, V.164, Q.168, G.216, D.219
35 PLIP interactions:19 interactions with chain C, 16 interactions with chain B- Hydrogen bonds: C:G.44, C:A.45, C:G.105, C:G.107, C:L.108, C:G.133, C:G.154, C:G.216, C:D.219, C:D.219, B:P.78
- Water bridges: C:E.155, C:E.155, C:R.158, C:R.158, C:Q.168, C:Q.168, C:N.191, B:S.25, B:H.26, B:H.26, B:K.27, B:G.28, B:K.60, B:K.60
- Salt bridges: C:H.152, C:H.152, B:H.26, B:K.27, B:K.27, B:K.60, B:K.60
- Hydrophobic interactions: B:T.81
- pi-Stacking: B:H.26, B:H.26
NPW.12: 24 residues within 4Å:- Chain A: H.26, K.27, G.28, K.60, P.78, E.79, A.80, T.81
- Chain D: M.42, G.44, A.45, G.105, P.106, G.107, L.108, A.132, G.133, H.152, P.153, G.154, V.164, Q.168, G.216, D.219
35 PLIP interactions:19 interactions with chain D, 16 interactions with chain A- Hydrogen bonds: D:G.44, D:A.45, D:G.105, D:G.107, D:L.108, D:G.133, D:G.154, D:G.216, D:D.219, D:D.219, A:P.78
- Water bridges: D:E.155, D:E.155, D:R.158, D:R.158, D:Q.168, D:Q.168, D:N.191, A:S.25, A:H.26, A:H.26, A:K.27, A:G.28, A:K.60, A:K.60
- Salt bridges: D:H.152, D:H.152, A:H.26, A:K.27, A:K.27, A:K.60, A:K.60
- Hydrophobic interactions: A:T.81
- pi-Stacking: A:H.26, A:H.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- 4 x NPW: BETA-6-HYDROXY-1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A