- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 12 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)
B4P.2: 28 residues within 4Å:- Chain A: Q.110, H.152, G.154, E.155, R.158, V.164, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain D: A.23, S.25, K.27, K.60
- Ligands: MG.1, CL.5
31 PLIP interactions:22 interactions with chain A, 9 interactions with chain D- Hydrogen bonds: A:Q.110, A:R.158, A:G.190, A:T.193, A:G.216, A:T.217, A:G.218, A:D.219, D:A.23
- Water bridges: A:E.155, A:E.155, A:E.155, A:K.189, A:K.189, A:K.189, A:N.191, A:N.191, A:T.193, A:T.193, A:T.193, A:H.246, D:K.60, D:K.60
- Salt bridges: A:H.152, A:K.189, D:K.27, D:K.27, D:K.27, D:K.27, D:K.60, D:K.60
B4P.3: 9 residues within 4Å:- Chain A: M.4, N.5, V.6, P.7, K.176, G.200, D.201, C.202, W.203
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:M.4, A:N.5, A:K.176, A:K.176, A:D.201, A:C.202
B4P.4: 8 residues within 4Å:- Chain A: V.62, Y.82, W.83, Q.94, L.95, E.96, E.97, Y.99
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:Q.94, A:E.96, A:E.97, A:E.97, A:Y.99
- Water bridges: A:K.89
- pi-Stacking: A:W.83, A:W.83, A:W.83
B4P.7: 28 residues within 4Å:- Chain B: Q.110, H.152, G.154, E.155, R.158, V.164, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain C: A.23, S.25, K.27, K.60
- Ligands: MG.6, CL.10
31 PLIP interactions:22 interactions with chain B, 9 interactions with chain C- Hydrogen bonds: B:Q.110, B:R.158, B:G.190, B:T.193, B:G.216, B:T.217, B:G.218, B:D.219, C:A.23
- Water bridges: B:E.155, B:E.155, B:E.155, B:K.189, B:K.189, B:K.189, B:N.191, B:N.191, B:T.193, B:T.193, B:T.193, B:H.246, C:K.60, C:K.60
- Salt bridges: B:H.152, B:K.189, C:K.27, C:K.27, C:K.27, C:K.27, C:K.60, C:K.60
B4P.8: 9 residues within 4Å:- Chain B: M.4, N.5, V.6, P.7, K.176, G.200, D.201, C.202, W.203
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:M.4, B:N.5, B:K.176, B:K.176, B:D.201, B:C.202
B4P.9: 8 residues within 4Å:- Chain B: V.62, Y.82, W.83, Q.94, L.95, E.96, E.97, Y.99
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:Q.94, B:E.96, B:E.97, B:E.97, B:Y.99
- Water bridges: B:K.89
- pi-Stacking: B:W.83, B:W.83, B:W.83
B4P.12: 28 residues within 4Å:- Chain A: A.23, S.25, K.27, K.60
- Chain C: Q.110, H.152, G.154, E.155, R.158, V.164, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.11, CL.15
31 PLIP interactions:22 interactions with chain C, 9 interactions with chain A- Hydrogen bonds: C:Q.110, C:R.158, C:G.190, C:T.193, C:G.216, C:T.217, C:G.218, C:D.219, A:A.23
- Water bridges: C:E.155, C:E.155, C:E.155, C:K.189, C:K.189, C:K.189, C:N.191, C:N.191, C:T.193, C:T.193, C:T.193, C:H.246, A:K.60, A:K.60
- Salt bridges: C:H.152, C:K.189, A:K.27, A:K.27, A:K.27, A:K.27, A:K.60, A:K.60
B4P.13: 9 residues within 4Å:- Chain C: M.4, N.5, V.6, P.7, K.176, G.200, D.201, C.202, W.203
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:M.4, C:N.5, C:K.176, C:K.176, C:D.201, C:C.202
B4P.14: 8 residues within 4Å:- Chain C: V.62, Y.82, W.83, Q.94, L.95, E.96, E.97, Y.99
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:Q.94, C:E.96, C:E.97, C:E.97, C:Y.99
- Water bridges: C:K.89
- pi-Stacking: C:W.83, C:W.83, C:W.83
B4P.17: 28 residues within 4Å:- Chain B: A.23, S.25, K.27, K.60
- Chain D: Q.110, H.152, G.154, E.155, R.158, V.164, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.16, CL.20
31 PLIP interactions:9 interactions with chain B, 22 interactions with chain D- Hydrogen bonds: B:A.23, D:Q.110, D:R.158, D:G.190, D:T.193, D:G.216, D:T.217, D:G.218, D:D.219
- Water bridges: B:K.60, B:K.60, D:E.155, D:E.155, D:E.155, D:K.189, D:K.189, D:K.189, D:N.191, D:N.191, D:T.193, D:T.193, D:T.193, D:H.246
- Salt bridges: B:K.27, B:K.27, B:K.27, B:K.27, B:K.60, B:K.60, D:H.152, D:K.189
B4P.18: 9 residues within 4Å:- Chain D: M.4, N.5, V.6, P.7, K.176, G.200, D.201, C.202, W.203
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:M.4, D:N.5, D:K.176, D:K.176, D:D.201, D:C.202
B4P.19: 8 residues within 4Å:- Chain D: V.62, Y.82, W.83, Q.94, L.95, E.96, E.97, Y.99
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:Q.94, D:E.96, D:E.97, D:E.97, D:Y.99
- Water bridges: D:K.89
- pi-Stacking: D:W.83, D:W.83, D:W.83
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 4 residues within 4Å:- Chain A: H.152
- Chain D: H.26, K.27
- Ligands: B4P.2
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain B: H.152
- Chain C: H.26, K.27
- Ligands: B4P.7
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain A: H.26, K.27
- Chain C: H.152
- Ligands: B4P.12
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain B: H.26, K.27
- Chain D: H.152
- Ligands: B4P.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 12 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-DEPENDENT NAD(P)H-HYDRATE DEHYDRATASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A