- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
APR.2: 23 residues within 4Å:- Chain A: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain D: A.23, S.25, K.27, K.60, E.79
- Ligands: MG.1
28 PLIP interactions:22 interactions with chain A, 6 interactions with chain D- Hydrogen bonds: A:H.152, A:G.190, A:G.190, A:G.216, A:T.217, A:G.218, A:D.219, A:D.219, D:S.25, D:S.25, D:E.79
- Water bridges: A:G.107, A:K.189, A:K.189, A:K.189, A:K.189, A:G.190, A:N.191, A:N.191, A:T.193, A:T.193, A:D.219, A:D.219, A:D.219, D:K.27
- Salt bridges: A:K.189, D:K.27, D:K.27
APR.3: 9 residues within 4Å:- Chain A: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:W.83, A:Q.94, A:E.96, A:E.97, A:E.97, A:Y.99
- Water bridges: A:Y.99
- Salt bridges: A:K.89
- pi-Stacking: A:W.83, A:W.83, A:W.83
APR.5: 23 residues within 4Å:- Chain B: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain C: A.23, S.25, K.27, K.60, E.79
- Ligands: MG.4
28 PLIP interactions:6 interactions with chain C, 22 interactions with chain B- Hydrogen bonds: C:S.25, C:S.25, C:E.79, B:H.152, B:G.190, B:G.190, B:G.216, B:T.217, B:G.218, B:D.219, B:D.219
- Water bridges: C:K.27, B:G.107, B:K.189, B:K.189, B:K.189, B:K.189, B:G.190, B:N.191, B:N.191, B:T.193, B:T.193, B:D.219, B:D.219, B:D.219
- Salt bridges: C:K.27, C:K.27, B:K.189
APR.6: 9 residues within 4Å:- Chain B: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:W.83, B:Q.94, B:E.96, B:E.97, B:E.97, B:Y.99
- Water bridges: B:Y.99
- Salt bridges: B:K.89
- pi-Stacking: B:W.83, B:W.83, B:W.83
APR.8: 23 residues within 4Å:- Chain A: A.23, S.25, K.27, K.60, E.79
- Chain C: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.7
28 PLIP interactions:22 interactions with chain C, 6 interactions with chain A- Hydrogen bonds: C:H.152, C:G.190, C:G.190, C:G.216, C:T.217, C:G.218, C:D.219, C:D.219, A:S.25, A:S.25, A:E.79
- Water bridges: C:G.107, C:K.189, C:K.189, C:K.189, C:K.189, C:G.190, C:N.191, C:N.191, C:T.193, C:T.193, C:D.219, C:D.219, C:D.219, A:K.27
- Salt bridges: C:K.189, A:K.27, A:K.27
APR.9: 9 residues within 4Å:- Chain C: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:W.83, C:Q.94, C:E.96, C:E.97, C:E.97, C:Y.99
- Water bridges: C:Y.99
- Salt bridges: C:K.89
- pi-Stacking: C:W.83, C:W.83, C:W.83
APR.11: 23 residues within 4Å:- Chain B: A.23, S.25, K.27, K.60, E.79
- Chain D: H.152, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.10
28 PLIP interactions:6 interactions with chain B, 22 interactions with chain D- Hydrogen bonds: B:S.25, B:S.25, B:E.79, D:H.152, D:G.190, D:G.190, D:G.216, D:T.217, D:G.218, D:D.219, D:D.219
- Water bridges: B:K.27, D:G.107, D:K.189, D:K.189, D:K.189, D:K.189, D:G.190, D:N.191, D:N.191, D:T.193, D:T.193, D:D.219, D:D.219, D:D.219
- Salt bridges: B:K.27, B:K.27, D:K.189
APR.12: 9 residues within 4Å:- Chain D: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:W.83, D:Q.94, D:E.96, D:E.97, D:E.97, D:Y.99
- Water bridges: D:Y.99
- Salt bridges: D:K.89
- pi-Stacking: D:W.83, D:W.83, D:W.83
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A