SMTL ID : 3rvh.1 (1 other biounit)

Crystal Structure of JMJD2A Complexed with Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.210, E.212, H.298 Ligands: HQ2.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.210, A:E.212, H2O.5, H2O.7

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.256, H.262, C.328, S.329, C.330 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.256, A:H.262, A:C.328, A:C.330

1 x HQ2: 8-hydroxy-3-(piperazin-1-yl)quinoline-5-carboxylic acid(Non-covalent)

HQ2.3: 13 residues within 4Å: Chain A: Y.154, A.156, D.157, Y.199, F.207, H.210, E.212, N.220, K.228, W.230, K.263, H.298 Ligands: NI.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.199, A:F.207, A:W.230 Hydrogen bonds: A:D.157 Water bridges: A:N.220 Salt bridges: A:K.228 pi-Stacking: A:F.207

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: K.239, Y.295, Y.321, Q.324, V.326, I.363, H.365 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.239 Water bridges: A:V.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, O.N.F. et al., Crystal Structure of JMJD2A Complexed with Inhibitor. To be Published

Release Date

2012-05-09

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4A

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