SMTL ID : 4gd4.2 (1 other biounit)

Crystal Structure of JMJD2A Complexed with Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.210, E.212, H.298 Ligands: 0WS.6 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.210, A:E.212, A:H.298, H2O.5

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.256, H.262, C.328, C.330 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.256, A:H.262, A:C.328, A:C.330

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Y.81, R.120, F.224 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: E.135, E.138, R.141 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain A: F.259, L.260, H.262, K.263, M.264, T.265 Ligand excluded by PLIP

1 x 0WS: 2-(1H-pyrazol-3-yl)pyridine-4-carboxylic acid(Non-covalent)

0WS.6: 11 residues within 4Å: Chain A: Y.154, Y.199, F.207, H.210, E.212, N.220, K.228, W.230, K.263, H.298 Ligands: NI.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.230 Hydrogen bonds: A:Y.154, A:E.212, A:N.220, A:K.263 Water bridges: A:S.218, A:S.310, A:N.312 Salt bridges: A:K.228 pi-Stacking: A:F.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, O.N.F. et al., Crystal Structure of JMJD2A Complexed with Inhibitor. TO BE PUBLISHED

Release Date

2012-08-15

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Lysine-specific demethylase 4A

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