SMTL ID : 4bis.1 (1 other biounit)

JMJD2A COMPLEXED WITH 8-HYDROXYQUINOLINE-4-CARBOXYLIC ACID

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.210, E.212, H.298 Ligands: 8HQ.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.210, A:E.212, A:H.298, H2O.3

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: C.256, H.262, C.328, S.329, C.330 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.256, A:H.262, A:C.328, A:C.330

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.249, P.250, G.251, S.252 Ligand excluded by PLIP

1 x 8HQ: 8-hydroxyquinoline-4-carboxylic acid(Non-covalent)

8HQ.4: 10 residues within 4Å: Chain A: Y.154, Y.199, F.207, H.210, E.212, K.228, W.230, K.263, H.298 Ligands: NI.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.199, A:F.207, A:W.230 Hydrogen bonds: A:Y.154 Water bridges: A:N.220, A:S.310 Salt bridges: A:K.228 pi-Stacking: A:F.207

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: Y.81, R.120, F.224, F.305 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.81, A:D.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopkinson, R.J. et al., 5-Carboxy-8-hydroxyquinoline is a Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor which Causes Iron Translocation. Chem Sci (2013)

Release Date

2014-02-05

Peptides

LYSINE-SPECIFIC DEMETHYLASE 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSINE-SPECIFIC DEMETHYLASE 4A

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