SMTL ID : 3rwh.1 (1 other biounit)

Rhesus macaque MHC class I molecule Mamu-B*17-MF8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MET- ARG- HIS- VAL- LEU- GLU- PRO- PHE: Pol MF8 peptide from Pol protein(Non-covalent)

MET-ARG-HIS-VAL-LEU-GLU-PRO-PHE.1: 28 residues within 4Å: Chain A: Y.7, Y.9, S.24, F.36, E.45, Y.59, R.66, E.69, A.70, T.73, H.74, E.76, N.77, Y.84, K.97, Y.99, S.116, Y.123, T.143, K.146, W.147, Y.152, R.155, F.156, Y.159, E.163, W.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.7, A:A.70, A:N.77, A:K.97, A:Y.99, A:Y.99, A:T.143, A:W.147, A:Y.152, A:Y.159, A:W.167 Hydrogen bonds: A:Y.7, A:S.24, A:S.24, A:S.24, A:R.66, A:T.73, A:N.77, A:Y.84, A:K.97, A:Y.99, A:Y.99, A:K.146, A:Y.152, A:Y.171, A:Y.171 Water bridges: A:N.150, A:N.150 Salt bridges: A:E.45, A:K.146, A:R.155 pi-Stacking: A:Y.123, A:F.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural basis of diverse peptide accommodation by the rhesus macaque MHC class I molecule Mamu-B*17: insights into immune protection from simian immunodeficiency virus. J.Immunol. (2011)

Release Date

2012-03-21

Peptides

Major histocompatibility complex class I: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major histocompatibility complex class I

Beta-2-microglobulin

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