SMTL ID : 3rwf.1

Rhesus macaque MHC class I molecule Mamu-B*17-QW9

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLN- THR- SER- GLN- TRP- ASP- ASP- PRO- TRP: Nef QW9 peptide from Protein Nef(Non-covalent)

GLN-THR-SER-GLN-TRP-ASP-ASP-PRO-TRP.1: 27 residues within 4Å: Chain A: Y.7, Y.9, Y.59, E.62, A.63, R.66, T.73, H.74, N.77, T.80, A.81, Y.84, I.95, K.97, Y.99, A.117, Y.123, T.143, K.146, W.147, N.150, Y.152, R.155, F.156, Y.159, W.167, Y.171 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.7, A:A.81, A:I.95, A:I.95, A:Y.152, A:Y.152 Hydrogen bonds: A:Y.59, A:R.66, A:N.77, A:Y.99, A:T.143, A:Y.152, A:Y.152, A:Y.159, A:Y.171 Water bridges: A:Y.9, A:A.67, A:N.77, A:N.77, A:S.116, A:R.155, A:R.155 Salt bridges: A:H.74, A:K.97, A:K.146, A:R.155 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural basis of diverse peptide accommodation by the rhesus macaque MHC class I molecule Mamu-B*17: insights into immune protection from simian immunodeficiency virus. J.Immunol. (2011)

Release Date

2012-03-21

Peptides

Major histocompatibility complex class I: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major histocompatibility complex class I

Beta-2-microglobulin

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