SMTL ID : 3s0i.1

Crystal Structure of D48V mutant of Human Glycolipid Transfer Protein complexed with 3-O-sulfo galactosylceramide containing nervonoyl acyl chain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x CIS: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE(Non-covalent)

CIS.1: 27 residues within 4Å: Chain A: L.9, V.27, L.30, F.33, F.34, L.37, I.45, V.48, N.52, L.92, A.93, W.96, F.103, F.107, I.124, L.136, H.140, V.144, F.148, F.161, L.165, F.183, Y.187, Y.207 Chain B: P.40, T.43, P.44 30 PLIP interactions: 3 interactions with chain B, 27 interactions with chain A Hydrophobic interactions: B:P.44, A:L.9, A:V.27, A:L.30, A:L.30, A:F.33, A:F.33, A:F.33, A:F.34, A:L.37, A:L.37, A:I.45, A:I.45, A:W.96, A:F.103, A:F.103, A:F.103, A:F.107, A:I.124, A:L.136, A:V.144, A:F.148, A:F.161, A:F.183, A:Y.187 Hydrogen bonds: B:P.40, B:T.43, A:N.52 Water bridges: A:N.52, A:N.52 CIS.2: 27 residues within 4Å: Chain A: P.40, T.43, P.44 Chain B: L.9, V.27, L.30, F.33, F.34, L.37, I.45, V.48, N.52, L.92, A.93, W.96, F.103, F.107, I.124, L.136, H.140, V.144, F.148, F.161, L.165, F.183, Y.187, Y.207 30 PLIP interactions: 2 interactions with chain A, 28 interactions with chain B Hydrophobic interactions: A:P.44, B:L.9, B:V.27, B:L.30, B:L.30, B:F.33, B:F.33, B:F.33, B:F.34, B:L.37, B:L.37, B:I.45, B:I.45, B:W.96, B:F.103, B:F.103, B:F.103, B:F.107, B:I.124, B:L.136, B:V.144, B:F.148, B:F.161, B:F.183, B:Y.187 Hydrogen bonds: A:P.40, B:N.52, B:Y.207 Water bridges: B:N.52, B:N.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein. Structure (2011)

Release Date

2012-02-08

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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