SMTL ID : 4gh0.1

Crystal structure of D48V mutant of human GLTP bound with 12:0 monosulfatide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x EIS: N-{(2S,3R,4E)-3-hydroxy-1-[(3-O-sulfo-beta-D-galactopyranosyl)oxy]octadec-4-en-2-yl}dodecanamide(Non-covalent)

EIS.1: 24 residues within 4Å: Chain A: V.41, F.42, P.44, I.45, N.52, L.92, A.93, W.96, G.100, F.103, L.136, H.140, V.144, I.147, F.148, A.151, Y.207 Chain B: P.40, T.43, P.44, V.144, I.147 Ligands: MYS.2, EIS.3 25 PLIP interactions: 18 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:V.41, A:F.42, A:P.44, A:I.45, A:W.96, A:F.103, A:F.103, A:L.136, A:I.147, A:F.148, A:A.151, B:P.44, B:V.144, B:V.144, B:I.147 Hydrogen bonds: A:N.52, B:T.43, B:T.43 Water bridges: A:N.52, A:N.52, A:K.87, A:K.87, A:A.93, A:A.93, B:K.46 EIS.3: 24 residues within 4Å: Chain A: P.40, T.43, P.44, V.144, I.147 Chain B: V.41, F.42, P.44, I.45, N.52, L.92, A.93, W.96, G.100, F.103, L.136, H.140, V.144, I.147, F.148, A.151, Y.207 Ligands: EIS.1, MYS.4 25 PLIP interactions: 19 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:V.41, B:F.42, B:P.44, B:I.45, B:W.96, B:F.103, B:F.103, B:L.136, B:I.147, B:F.148, B:A.151, A:P.44, A:V.144, A:V.144, A:I.147 Hydrogen bonds: B:N.52, B:Y.207, A:T.43 Water bridges: B:N.52, B:N.52, B:K.87, B:K.87, B:A.93, B:A.93, A:K.46

2 x MYS: PENTADECANE(Non-covalent)

MYS.2: 8 residues within 4Å: Chain A: L.30, F.33, L.37, F.107, L.108, L.165, F.183 Ligands: EIS.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.30, A:F.33, A:L.37, A:F.107, A:L.108, A:L.165, A:F.183 MYS.4: 8 residues within 4Å: Chain B: L.30, F.33, L.37, F.107, L.108, L.165, F.183 Ligands: EIS.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.30, B:F.33, B:L.37, B:F.107, B:L.108, B:L.165, B:F.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Structural insights into lipid-dependent reversible dimerization of human GLTP. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-04-10

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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