SMTL ID : 4gxd.1

Crystal structure of D48V mutant of human GLTP bound with 12:0 disulfatide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 0SG: N-{(2S,3R,4E)-1-[(3,6-di-O-sulfo-beta-D-galactopyranosyl)oxy]-3-hydroxyoctadec-4-en-2-yl}dodecanamide(Non-covalent)

0SG.1: 26 residues within 4Å: Chain A: F.42, G.51, N.52, K.55, K.87, L.92, A.93, W.96, G.100, F.103, H.140, V.144, I.147, F.148, Y.207, V.209 Chain B: P.40, V.41, P.44, I.45, Y.132, H.140, I.147, F.148, A.151 Ligands: 0SG.2 20 PLIP interactions: 13 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:F.42, A:W.96, A:F.103, A:F.103, A:V.144, A:F.148, B:P.44, B:P.44, B:I.45, B:Y.132, B:I.147, B:A.151 Hydrogen bonds: A:N.52, B:P.40 Water bridges: A:N.52, A:N.52, A:N.52, A:A.93, A:A.93 Salt bridges: A:K.87 0SG.2: 26 residues within 4Å: Chain A: P.40, V.41, P.44, I.45, Y.132, H.140, I.147, F.148, A.151 Chain B: F.42, G.51, N.52, K.55, K.87, L.92, A.93, W.96, G.100, F.103, H.140, V.144, I.147, F.148, Y.207, V.209 Ligands: 0SG.1 22 PLIP interactions: 13 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:F.42, B:W.96, B:F.103, B:F.103, B:V.144, B:F.148, A:P.44, A:P.44, A:I.45, A:Y.132, A:I.147, A:A.151 Hydrogen bonds: B:N.52, A:P.40 Water bridges: B:N.52, B:N.52, B:N.52, B:A.93, B:A.93, A:T.43, A:T.43 Salt bridges: B:K.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Structural insights into lipid-dependent reversible dimerization of human GLTP. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-04-10

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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