SMTL ID : 3s1l.1

Crystal Structure of Apo-form FurX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.94, G.95, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:C.100, A:C.108 ZN.2: 5 residues within 4Å: Chain A: C.40, H.63, E.64, C.150, R.333 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:H.63, A:E.64, A:C.150 ZN.4: 5 residues within 4Å: Chain B: C.94, G.95, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.94, B:C.97, B:C.100, B:C.108 ZN.5: 5 residues within 4Å: Chain B: C.40, H.63, E.64, C.150, R.333 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.40, B:H.63, B:E.64, B:C.150 ZN.7: 5 residues within 4Å: Chain C: C.94, G.95, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.94, C:C.97, C:C.100, C:C.108 ZN.8: 6 residues within 4Å: Chain C: C.40, H.63, E.64, C.150, R.333 Ligands: P6G.9 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.40, C:H.63, C:E.64, C:C.150 ZN.10: 5 residues within 4Å: Chain D: C.94, G.95, C.97, C.100, C.108 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.94, D:C.97, D:C.100, D:C.108 ZN.11: 5 residues within 4Å: Chain D: C.40, H.63, E.64, C.150, R.333 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.40, D:H.63, D:E.64, D:C.150

4 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.3: 13 residues within 4Å: Chain A: T.42, W.51, V.53, W.89, N.113, Y.116, C.150, T.154, L.264, I.287, V.288 Chain B: F.274, L.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.42 P6G.6: 9 residues within 4Å: Chain B: T.42, W.51, V.53, W.89, N.113, Y.116, C.150, I.287, V.288 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.111 P6G.9: 16 residues within 4Å: Chain C: T.42, W.51, V.53, H.63, W.89, C.108, Q.111, N.113, Y.116, C.150, L.264, I.287, V.288 Chain D: R.255, L.278 Ligands: ZN.8 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:R.255, C:T.42 P6G.12: 10 residues within 4Å: Chain C: L.278 Chain D: T.42, W.51, V.53, W.89, Y.116, C.150, L.264, I.287, V.288 1 PLIP interactions: 1 interactions with chain D Water bridges: D:V.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, C. et al., Furfural reduction mechanism of a zinc-dependent alcohol dehydrogenase from Cupriavidus necator JMP134. Mol.Microbiol. (2012)

Release Date

2012-04-25

Peptides

Zinc-containing alcohol dehydrogenase superfamily: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Zinc-containing alcohol dehydrogenase superfamily

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