SMTL ID : 3s2o.1

Fragment based discovery and optimisation of bace-1 inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x EV6: (3S)-3-(2-amino-5-chloro-1H-benzimidazol-1-yl)-N-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]pentanamide(Non-covalent)

EV6.1: 12 residues within 4Å: Chain A: D.48, G.50, S.51, V.85, Y.87, W.92, F.124, W.131, I.134, D.244, G.246, T.247 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.87, A:W.131, A:I.134 Hydrogen bonds: A:G.246 Salt bridges: A:D.48, A:D.244

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 4 residues within 4Å: Chain A: H.61, T.119, E.120, S.121 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: K.123 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madden, J. et al., Fragment-based discovery and optimization of BACE1 inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2011-06-01

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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