SMTL ID : 3s8o.1

Crystal Structure of the Grb2 SH2 Domain in Complex with a pYXN-Derived Tripeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ACE- PTR- 02K- ASN- NH2: pYAc6cN(Non-covalent)

ACE-PTR-02K-ASN-NH2.1: 11 residues within 4Å: Chain A: R.15, R.34, S.36, S.38, S.44, Q.54, H.55, F.56, K.57, L.68, W.69 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Q.54, A:H.55, A:F.56, A:K.57, A:W.69 Hydrogen bonds: A:R.15, A:R.15, A:S.36, A:S.38, A:S.38, A:S.44, A:H.55, A:K.57, A:L.68 Water bridges: A:R.34, A:R.34, A:S.38, A:K.57, A:K.57 Salt bridges: A:R.15, A:R.34 pi-Cation interactions: A:R.15

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: H.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.83

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: T.86, S.87, Q.93, F.95 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Myslinski, J.M. et al., Protein-ligand interactions: thermodynamic effects associated with increasing nonpolar surface area. J.Am.Chem.Soc. (2011)

Release Date

2011-11-02

Peptides

Growth factor receptor-bound protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Growth factor receptor-bound protein 2

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