- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 5 residues within 4Å:- Chain A: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:Y.268, H2O.1, H2O.2
CA.8: 5 residues within 4Å:- Chain B: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:Y.268, H2O.22, H2O.23
CA.14: 5 residues within 4Å:- Chain C: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:Y.268, H2O.43, H2O.45
CA.20: 5 residues within 4Å:- Chain D: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:Y.268, H2O.64, H2O.66
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 2 residues within 4Å:- Chain A: N.65, I.361
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.361
- Hydrogen bonds: A:N.65
- Water bridges: A:I.392
NAG.9: 2 residues within 4Å:- Chain B: N.65, I.361
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.361
- Hydrogen bonds: B:N.65
- Water bridges: B:I.392
NAG.15: 2 residues within 4Å:- Chain C: N.65, I.361
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.361
- Hydrogen bonds: C:N.65
- Water bridges: C:I.392
NAG.21: 2 residues within 4Å:- Chain D: N.65, I.361
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.361
- Hydrogen bonds: D:N.65
- Water bridges: D:I.392
- 4 x ZMR: ZANAMIVIR(Non-covalent)
ZMR.4: 17 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:W.98, A:I.142, A:R.144
- Hydrogen bonds: A:R.71, A:W.98, A:W.98, A:R.144, A:E.197, A:R.212, A:R.212, A:Y.268
- Water bridges: A:R.37, A:R.75, A:R.144, A:E.147, A:E.197
- Salt bridges: A:R.37, A:E.38, A:D.70, A:E.147, A:R.212, A:R.292
ZMR.10: 17 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:W.98, B:I.142, B:R.144
- Hydrogen bonds: B:R.71, B:W.98, B:W.98, B:R.144, B:E.197, B:R.212, B:R.212, B:Y.268
- Water bridges: B:R.37, B:R.75, B:R.144, B:E.147, B:E.197
- Salt bridges: B:R.37, B:E.38, B:D.70, B:E.147, B:R.212, B:R.292
ZMR.16: 17 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
22 PLIP interactions:22 interactions with chain C- Hydrophobic interactions: C:W.98, C:I.142, C:R.144
- Hydrogen bonds: C:R.71, C:W.98, C:W.98, C:R.144, C:E.197, C:R.212, C:R.212, C:Y.268
- Water bridges: C:R.37, C:R.75, C:R.144, C:E.147, C:E.197
- Salt bridges: C:R.37, C:E.38, C:D.70, C:E.147, C:R.212, C:R.292
ZMR.22: 17 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, R.75, W.98, I.142, R.144, E.147, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:W.98, D:I.142, D:R.144
- Hydrogen bonds: D:R.71, D:W.98, D:W.98, D:R.144, D:E.197, D:R.212, D:R.212, D:Y.268
- Water bridges: D:R.37, D:R.75, D:R.144, D:E.147, D:E.197
- Salt bridges: D:R.37, D:E.38, D:D.70, D:E.147, D:R.212, D:R.292
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 3 residues within 4Å:- Chain A: K.176, T.183, N.184
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.176, A:K.176, A:N.184
- Water bridges: A:K.176, A:T.183, A:D.228
GOL.6: 6 residues within 4Å:- Chain A: K.206, I.224, D.226, D.230, Y.231, E.232
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.206, A:K.206
GOL.11: 3 residues within 4Å:- Chain B: K.176, T.183, N.184
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.176, B:K.176, B:N.184
- Water bridges: B:K.176, B:T.183, B:D.228
GOL.12: 6 residues within 4Å:- Chain B: K.206, I.224, D.226, D.230, Y.231, E.232
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.206, B:K.206
GOL.17: 3 residues within 4Å:- Chain C: K.176, T.183, N.184
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.176, C:K.176, C:N.184
- Water bridges: C:K.176, C:T.183, C:D.228
GOL.18: 6 residues within 4Å:- Chain C: K.206, I.224, D.226, D.230, Y.231, E.232
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:K.206, C:K.206
GOL.23: 3 residues within 4Å:- Chain D: K.176, T.183, N.184
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.176, D:K.176, D:N.184
- Water bridges: D:K.176, D:T.183, D:D.228
GOL.24: 6 residues within 4Å:- Chain D: K.206, I.224, D.226, D.230, Y.231, E.232
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:K.206, D:K.206
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, M.Y. et al., Influenza a virus n5 neuraminidase has an extended 150-cavity. J.Virol. (2011)
- Release Date
- 2011-08-10
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, M.Y. et al., Influenza a virus n5 neuraminidase has an extended 150-cavity. J.Virol. (2011)
- Release Date
- 2011-08-10
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A