- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose(Non-covalent)
GAL-SIA.2: 9 residues within 4Å:- Chain A: S.288, S.290, S.291, S.293, N.320, K.321, N.322, W.323, E.356
7 PLIP interactions:7 interactions with chain A- Water bridges: A:N.320, A:I.289
- Hydrophobic interactions: A:W.323
- Hydrogen bonds: A:S.291, A:S.293, A:S.293, A:N.320, A:E.356
GAL-SIA.7: 9 residues within 4Å:- Chain B: S.288, S.290, S.291, S.293, N.320, K.321, N.322, W.323, E.356
7 PLIP interactions:7 interactions with chain B- Water bridges: B:N.320, B:I.289
- Hydrophobic interactions: B:W.323
- Hydrogen bonds: B:S.291, B:S.293, B:S.293, B:N.320, B:E.356
GAL-SIA.12: 9 residues within 4Å:- Chain C: S.288, S.290, S.291, S.293, N.320, K.321, N.322, W.323, E.356
7 PLIP interactions:7 interactions with chain C- Water bridges: C:N.320, C:I.289
- Hydrophobic interactions: C:W.323
- Hydrogen bonds: C:S.291, C:S.293, C:S.293, C:N.320, C:E.356
GAL-SIA.17: 9 residues within 4Å:- Chain D: S.288, S.290, S.291, S.293, N.320, K.321, N.322, W.323, E.356
7 PLIP interactions:7 interactions with chain D- Water bridges: D:N.320, D:I.289
- Hydrophobic interactions: D:W.323
- Hydrogen bonds: D:S.291, D:S.293, D:S.293, D:N.320, D:E.356
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.213, A:G.217, A:D.243, A:Y.268, H2O.1, H2O.1
CA.8: 5 residues within 4Å:- Chain B: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.213, B:G.217, B:D.243, B:Y.268, H2O.14, H2O.15
CA.13: 5 residues within 4Å:- Chain C: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.213, C:G.217, C:D.243, C:Y.268, H2O.28, H2O.28
CA.18: 5 residues within 4Å:- Chain D: D.213, G.217, D.243, Y.268, G.269
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.213, D:G.217, D:D.243, D:Y.268, H2O.42, H2O.42
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 2 residues within 4Å:- Chain A: N.65, I.361
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.361
- Hydrogen bonds: A:N.65
- Water bridges: A:N.66
NAG.9: 2 residues within 4Å:- Chain B: N.65, I.361
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.361
- Hydrogen bonds: B:N.65
- Water bridges: B:N.66
NAG.14: 2 residues within 4Å:- Chain C: N.65, I.361
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.361
- Hydrogen bonds: C:N.65
- Water bridges: C:N.66
NAG.19: 2 residues within 4Å:- Chain D: N.65, I.361
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.361
- Hydrogen bonds: D:N.65
- Water bridges: D:N.66
- 4 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.5: 14 residues within 4Å:- Chain A: R.37, E.38, D.70, R.71, W.98, R.144, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:W.98
- Hydrogen bonds: A:E.38, A:D.70, A:D.70, A:D.70, A:R.71, A:R.144, A:E.197, A:R.212, A:R.212, A:Y.326
- Water bridges: A:R.75, A:E.147, A:E.197
- Salt bridges: A:R.37, A:R.212, A:R.292
SIA.10: 14 residues within 4Å:- Chain B: R.37, E.38, D.70, R.71, W.98, R.144, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:W.98
- Hydrogen bonds: B:E.38, B:D.70, B:D.70, B:D.70, B:R.71, B:R.144, B:E.197, B:R.212, B:R.212, B:Y.326
- Water bridges: B:R.75, B:E.147, B:E.197
- Salt bridges: B:R.37, B:R.212, B:R.292
SIA.15: 14 residues within 4Å:- Chain C: R.37, E.38, D.70, R.71, W.98, R.144, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:W.98
- Hydrogen bonds: C:E.38, C:D.70, C:D.70, C:D.70, C:R.71, C:R.144, C:E.197, C:R.212, C:R.212, C:Y.326
- Water bridges: C:R.75, C:E.147, C:E.197
- Salt bridges: C:R.37, C:R.212, C:R.292
SIA.20: 14 residues within 4Å:- Chain D: R.37, E.38, D.70, R.71, W.98, R.144, A.166, E.196, E.197, R.212, N.214, Y.268, R.292, Y.326
17 PLIP interactions:17 interactions with chain D- Hydrophobic interactions: D:W.98
- Hydrogen bonds: D:E.38, D:D.70, D:D.70, D:D.70, D:R.71, D:R.144, D:E.197, D:R.212, D:R.212, D:Y.326
- Water bridges: D:R.75, D:E.147, D:E.197
- Salt bridges: D:R.37, D:R.212, D:R.292
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sun, X. et al., Structure of influenza virus N7: the last piece of the neuraminidase "jigsaw" puzzle. J.Virol. (2014)
- Release Date
- 2014-07-30
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sun, X. et al., Structure of influenza virus N7: the last piece of the neuraminidase "jigsaw" puzzle. J.Virol. (2014)
- Release Date
- 2014-07-30
- Peptides
- Neuraminidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B